{"id":"https://openalex.org/W2412067313","doi":"https://doi.org/10.1093/database/baw085","title":"URS DataBase: universe of RNA structures and their motifs","display_name":"URS DataBase: universe of RNA structures and their motifs","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2412067313","doi":"https://doi.org/10.1093/database/baw085","mag":"2412067313","pmid":"https://pubmed.ncbi.nlm.nih.gov/27242032"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw085","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw085/8224711/baw085.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw085/8224711/baw085.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030967753","display_name":"Eugene F. Baulin","orcid":"https://orcid.org/0000-0003-4694-9783"},"institutions":[{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]},{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Eugene Baulin","raw_affiliation_strings":["Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia mroytberg@lpm.org.ru","Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia","Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia mroytberg@lpm.org.ru","institution_ids":[]},{"raw_affiliation_string":"Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia","institution_ids":["https://openalex.org/I153845743"]},{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia","institution_ids":["https://openalex.org/I4210159227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101569760","display_name":"Victor Yacovlev","orcid":"https://orcid.org/0000-0003-3532-5297"},"institutions":[{"id":"https://openalex.org/I118501908","display_name":"National Research University Higher School of Economics","ror":"https://ror.org/055f7t516","country_code":"RU","type":"education","lineage":["https://openalex.org/I118501908"]},{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Victor Yacovlev","raw_affiliation_strings":["Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","institution_ids":[]},{"raw_affiliation_string":"Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","institution_ids":["https://openalex.org/I118501908"]},{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia","institution_ids":["https://openalex.org/I4210159227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031937380","display_name":"Denis Khachko","orcid":"https://orcid.org/0000-0003-3437-3131"},"institutions":[{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Denis Khachko","raw_affiliation_strings":["Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia","institution_ids":["https://openalex.org/I4210159227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076136987","display_name":"Sergey Spirin","orcid":"https://orcid.org/0000-0002-8041-1808"},"institutions":[{"id":"https://openalex.org/I19880235","display_name":"Lomonosov Moscow State University","ror":"https://ror.org/010pmpe69","country_code":"RU","type":"education","lineage":["https://openalex.org/I19880235"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Sergei Spirin","raw_affiliation_strings":["Department of Mathematical Methods in Biology, Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical Methods in Biology, Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia","institution_ids":["https://openalex.org/I19880235"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004471892","display_name":"Mikhail Roytberg","orcid":"https://orcid.org/0000-0002-5848-367X"},"institutions":[{"id":"https://openalex.org/I118501908","display_name":"National Research University Higher School of Economics","ror":"https://ror.org/055f7t516","country_code":"RU","type":"education","lineage":["https://openalex.org/I118501908"]},{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]},{"id":"https://openalex.org/I153845743","display_name":"Moscow Institute of Physics and Technology","ror":"https://ror.org/00v0z9322","country_code":"RU","type":"education","lineage":["https://openalex.org/I153845743"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail Roytberg","raw_affiliation_strings":["Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia","Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia","Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia"],"affiliations":[{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","institution_ids":[]},{"raw_affiliation_string":"Laboratory of Applied Mathematics, Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia","institution_ids":["https://openalex.org/I4210159227"]},{"raw_affiliation_string":"Department of Algorithms and Technology of Programming, Faculty of Innovations and High Technology, Moscow Institute of Physics and Technology (State University), Dolgoprudny, Moscow Region 141700, Russia","institution_ids":["https://openalex.org/I153845743"]},{"raw_affiliation_string":"Department of Big Data and Information Retrieval, Faculty of Computer Science, National Research University Higher School of Economics, Moscow 101000, Russia","institution_ids":["https://openalex.org/I118501908"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5030967753"],"corresponding_institution_ids":["https://openalex.org/I153845743","https://openalex.org/I4210159227"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.8475,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.75698204,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw085","last_page":"baw085"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.986299991607666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5124569535255432},{"id":"https://openalex.org/keywords/universe","display_name":"Universe","score":0.49357688426971436},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45575398206710815},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3264920115470886},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15337470173835754},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.13961070775985718},{"id":"https://openalex.org/keywords/astronomy","display_name":"Astronomy","score":0.09395363926887512}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5124569535255432},{"id":"https://openalex.org/C84999194","wikidata":"https://www.wikidata.org/wiki/Q1","display_name":"Universe","level":2,"score":0.49357688426971436},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45575398206710815},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3264920115470886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15337470173835754},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.13961070775985718},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.09395363926887512}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059372","descriptor_name":"Nucleotide Motifs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw085","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw085/8224711/baw085.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27242032","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27242032","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw085","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw085","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4885603","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4885603","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw085","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw085","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw085/8224711/baw085.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4324088555","display_name":null,"funder_award_id":"13-07-00969","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"},{"id":"https://openalex.org/G4334575401","display_name":null,"funder_award_id":"14-04-01693","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"},{"id":"https://openalex.org/G6225179923","display_name":null,"funder_award_id":"14-01-93106","funder_id":"https://openalex.org/F4320321079","funder_display_name":"Russian Foundation for Basic Research"}],"funders":[{"id":"https://openalex.org/F4320321079","display_name":"Russian Foundation for Basic Research","ror":"https://ror.org/02mh1ke95"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2412067313.pdf","grobid_xml":"https://content.openalex.org/works/W2412067313.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W142718297","https://openalex.org/W166206240","https://openalex.org/W577926080","https://openalex.org/W1492437754","https://openalex.org/W1493359429","https://openalex.org/W1672171675","https://openalex.org/W1925397890","https://openalex.org/W1965243792","https://openalex.org/W1982680051","https://openalex.org/W2003956388","https://openalex.org/W2006499443","https://openalex.org/W2007615447","https://openalex.org/W2013195357","https://openalex.org/W2025763720","https://openalex.org/W2028512329","https://openalex.org/W2031352989","https://openalex.org/W2051296286","https://openalex.org/W2064515831","https://openalex.org/W2084014179","https://openalex.org/W2089872148","https://openalex.org/W2091705944","https://openalex.org/W2099028333","https://openalex.org/W2102017611","https://openalex.org/W2102695327","https://openalex.org/W2103250001","https://openalex.org/W2103848900","https://openalex.org/W2106478835","https://openalex.org/W2118044280","https://openalex.org/W2119863995","https://openalex.org/W2123241418","https://openalex.org/W2130454013","https://openalex.org/W2134489577","https://openalex.org/W2143407915","https://openalex.org/W2147128567","https://openalex.org/W2150404344","https://openalex.org/W2152635855","https://openalex.org/W2154189169","https://openalex.org/W2157483415","https://openalex.org/W2158073100","https://openalex.org/W2162224067","https://openalex.org/W2204199511","https://openalex.org/W3145676374","https://openalex.org/W4214953980","https://openalex.org/W6629495878"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"The":[0,20,28,44,102],"Universe":[1],"of":[2,22,31,40,56,71,87,100,128,150,167],"RNA":[3,42,131],"Structures":[4],"DataBase":[5],"(URSDB)":[6],"stores":[7],"information":[8,109],"obtained":[9],"from":[10],"all":[11,75],"RNA-containing":[12],"PDB":[13],"entries":[14,16],"(2935":[15],"in":[17,130,148],"October":[18],"2015).":[19],"content":[21],"the":[23,41,145,158],"database":[24,29,45,160],"is":[25,157],"updated":[26],"regularly.":[27],"consists":[30],"51":[32],"tables":[33],"containing":[34],"indexed":[35],"data":[36,66],"on":[37,84,90,97,110,164,170],"various":[38,64],"elements":[39],"structures.":[43,76,132,152],"provides":[46],"a":[47,54,68,124],"web":[48],"interface":[49],"allowing":[50],"user":[51,103],"to":[52,62],"select":[53],"subset":[55,70],"structures":[57,72,141],"with":[58,144],"desired":[59],"features":[60],"and":[61,107,138,142,169],"obtain":[63,82],"statistical":[65],"for":[67,74],"selected":[69,116],"or":[73,96,114],"In":[77],"particular,":[78],"one":[79],"can":[80,104],"easily":[81],"statistics":[83],"geometric":[85],"parameters":[86],"base":[88],"pairs,":[89],"structural":[91],"motifs":[92],"(stems,":[93],"loops,":[94],"etc.)":[95],"different":[98],"types":[99],"pseudoknots.":[101],"also":[105],"view":[106],"get":[108],"an":[111],"individual":[112],"structure":[113],"its":[115],"parts,":[117],"e.g.":[118],"RNA-protein":[119],"hydrogen":[120],"bonds.":[121],"URSDB":[122,156],"employs":[123],"new":[125],"original":[126],"definition":[127,134,147],"loops":[129],"That":[133],"fits":[135],"both":[136],"pseudoknot-free":[137,151],"pseudoknotted":[139],"secondary":[140],"coincides":[143],"classical":[146],"case":[149],"To":[153],"our":[154],"knowledge,":[155],"first":[159],"supporting":[161],"searches":[162],"based":[163],"topological":[165],"classification":[166],"pseudoknots":[168],"extended":[171],"loop":[172],"classification.Database":[173],"URL:":[174],"http://server3.lpm.org.ru/urs/.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
