{"id":"https://openalex.org/W2346452181","doi":"https://doi.org/10.1093/database/baw068","title":"BioCreative V CDR task corpus: a resource for chemical disease relation extraction","display_name":"BioCreative V CDR task corpus: a resource for chemical disease relation extraction","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2346452181","doi":"https://doi.org/10.1093/database/baw068","mag":"2346452181","pmid":"https://pubmed.ncbi.nlm.nih.gov/27161011"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw068/8224483/baw068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw068/8224483/baw068.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074284592","display_name":"Jiao Li","orcid":"https://orcid.org/0000-0001-6391-8343"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiao Li","raw_affiliation_strings":["1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","institution_ids":[]},{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080328149","display_name":"Yueping Sun","orcid":"https://orcid.org/0000-0003-3696-4410"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueping Sun","raw_affiliation_strings":["1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","institution_ids":[]},{"raw_affiliation_string":"Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109091706","display_name":"Robin J. Johnson","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robin J. Johnson","raw_affiliation_strings":["2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063325560","display_name":"Daniela Sciaky","orcid":"https://orcid.org/0009-0000-3182-9493"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniela Sciaky","raw_affiliation_strings":["2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058918482","display_name":"Chih-Hsuan Wei","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih-Hsuan Wei","raw_affiliation_strings":["3National Center for Biotechnology Information, Bethesda, MD 20894, USA","National Center for Biotechnology Information, Bethesda, MD 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3National Center for Biotechnology Information, Bethesda, MD 20894, USA","institution_ids":[]},{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044947146","display_name":"Robert Leaman","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Leaman","raw_affiliation_strings":["3National Center for Biotechnology Information, Bethesda, MD 20894, USA","National Center for Biotechnology Information, Bethesda, MD 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3National Center for Biotechnology Information, Bethesda, MD 20894, USA","institution_ids":[]},{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064334598","display_name":"Allan Peter Davis","orcid":"https://orcid.org/0000-0002-5741-7128"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allan Peter Davis","raw_affiliation_strings":["2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102941229","display_name":"Carolyn Mattingly","orcid":"https://orcid.org/0000-0002-2146-9436"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolyn J. Mattingly","raw_affiliation_strings":["2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076813284","display_name":"Thomas C. Wiegers","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas C. Wiegers","raw_affiliation_strings":["2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":[]},{"raw_affiliation_string":"Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["3National Center for Biotechnology Information, Bethesda, MD 20894, USA zhiyong.lu@nih.gov","National Center for Biotechnology Information, Bethesda, MD 20894, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"3National Center for Biotechnology Information, Bethesda, MD 20894, USA zhiyong.lu@nih.gov","institution_ids":[]},{"raw_affiliation_string":"National Center for Biotechnology Information, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5083081872"],"corresponding_institution_ids":["https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":15.3765,"has_fulltext":true,"cited_by_count":885,"citation_normalized_percentile":{"value":0.99301706,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"2016","issue":null,"first_page":"baw068","last_page":"baw068"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8605497479438782},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8251028060913086},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6748323440551758},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.6326162219047546},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6209979057312012},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6197428107261658},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5317845344543457},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.495856374502182},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.49336257576942444},{"id":"https://openalex.org/keywords/unique-identifier","display_name":"Unique identifier","score":0.48437222838401794},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47976526618003845},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4780590832233429},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.47585174441337585},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4718111753463745},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.465290904045105},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4611772298812866},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.4152982831001282},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.21475142240524292},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.09050881862640381}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8605497479438782},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8251028060913086},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6748323440551758},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.6326162219047546},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6209979057312012},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6197428107261658},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5317845344543457},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.495856374502182},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.49336257576942444},{"id":"https://openalex.org/C119839945","wikidata":"https://www.wikidata.org/wiki/Q6545185","display_name":"Unique identifier","level":3,"score":0.48437222838401794},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47976526618003845},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4780590832233429},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.47585174441337585},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4718111753463745},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.465290904045105},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4611772298812866},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.4152982831001282},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.21475142240524292},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.09050881862640381},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw068/8224483/baw068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27161011","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27161011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw068","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw068","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4860626","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4860626","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baw068","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw068","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw068/8224483/baw068.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1096228966","display_name":null,"funder_award_id":"ES019604","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G2469242077","display_name":null,"funder_award_id":"R01 ES019604","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G642129057","display_name":null,"funder_award_id":"ES014065","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G7074319969","display_name":null,"funder_award_id":"R01 ES014065","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"}],"funders":[{"id":"https://openalex.org/F4320327609","display_name":"China Knowledge Centre for Engineering Sciences and Technology","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2346452181.pdf","grobid_xml":"https://content.openalex.org/works/W2346452181.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W39864132","https://openalex.org/W90362830","https://openalex.org/W1964670939","https://openalex.org/W1992442866","https://openalex.org/W2022279628","https://openalex.org/W2040610660","https://openalex.org/W2052217781","https://openalex.org/W2061172803","https://openalex.org/W2072725120","https://openalex.org/W2086320398","https://openalex.org/W2096951189","https://openalex.org/W2102575587","https://openalex.org/W2104148262","https://openalex.org/W2112543617","https://openalex.org/W2121652122","https://openalex.org/W2123579157","https://openalex.org/W2129767020","https://openalex.org/W2136640051","https://openalex.org/W2137937634","https://openalex.org/W2142016317","https://openalex.org/W2149369282","https://openalex.org/W2152143870","https://openalex.org/W2153138487","https://openalex.org/W2163303745","https://openalex.org/W2169099542","https://openalex.org/W2169491861","https://openalex.org/W2170189740","https://openalex.org/W2178441628","https://openalex.org/W2977393556","https://openalex.org/W6603694148"],"related_works":["https://openalex.org/W3199871245","https://openalex.org/W2915436880","https://openalex.org/W3123942215","https://openalex.org/W4285819037","https://openalex.org/W3198729192","https://openalex.org/W3095980030","https://openalex.org/W4379379356","https://openalex.org/W4286980122","https://openalex.org/W3198510869","https://openalex.org/W2032702205"],"abstract_inverted_index":{"Community-run,":[0],"formal":[1],"evaluations":[2],"and":[3,34,56,106,121,126,147,160,195,200,224],"manually":[4],"annotated":[5,143],"text":[6,158],"corpora":[7],"are":[8],"critically":[9],"important":[10],"for":[11,25,78,102,112,197,218,231],"advancing":[12],"biomedical":[13,69],"text-mining":[14,233],"research.":[15],"Recently":[16],"in":[17,59,68,203],"BioCreative":[18,220],"V,":[19],"a":[20,46,94,184,228],"new":[21],"challenge":[22,91,222],"was":[23,73,215],"organized":[24],"the":[26,41,60,79,90,156,167,173,198,204,209,219,232],"tasks":[27,223],"of":[28,43,63,96,137],"disease":[29,36,199],"named":[30],"entity":[31,104,152],"recognition":[32],"(DNER)":[33],"chemical-induced":[35],"(CID)":[37],"relation":[38,57,114],"extraction.":[39],"Given":[40],"nature":[42],"both":[44,53,155],"tasks,":[45],"test":[47,205],"collection":[48],"is":[49],"required":[50],"to":[51,75,208],"contain":[52],"disease/chemical":[54,103],"annotations":[55,58],"same":[61],"set":[62,206],"articles.":[64],"Despite":[65],"previous":[66],"efforts":[67],"corpus":[70,86,135,214],"construction,":[71],"none":[72],"found":[74],"be":[76],"sufficient":[77],"task.":[80],"Thus,":[81],"we":[82],"developed":[83],"our":[84],"own":[85],"called":[87],"BC5CDR":[88,134],"during":[89],"by":[92,179,183],"inviting":[93],"team":[95],"Medical":[97],"Subject":[98],"Headings":[99],"(MeSH)":[100],"indexers":[101],"annotation":[105,119,124,128,153],"Comparative":[107],"Toxicogenomics":[108],"Database":[109],"(CTD)":[110],"curators":[111],"CID":[113],"annotation.":[115],"To":[116,170],"ensure":[117,171],"high":[118],"quality":[120],"productivity,":[122],"detailed":[123],"guidelines":[125],"automatic":[127],"tools":[129],"were":[130,175,193],"provided.":[131],"The":[132,187],"resulting":[133],"consists":[136],"1500":[138],"PubMed":[139],"articles":[140],"with":[141],"4409":[142],"chemicals,":[144,201],"5818":[145],"diseases":[146],"3116":[148],"chemical-disease":[149],"interactions.":[150],"Each":[151],"includes":[154],"mention":[157],"spans":[159],"normalized":[161],"concept":[162],"identifiers,":[163],"using":[164],"MeSH":[165],"as":[166,227],"controlled":[168],"vocabulary.":[169],"accuracy,":[172],"entities":[174],"first":[176],"captured":[177],"independently":[178],"two":[180],"annotators":[181],"followed":[182],"consensus":[185],"annotation:":[186],"average":[188],"inter-annotator":[189],"agreement":[190],"(IAA)":[191],"scores":[192],"87.49%":[194],"96.05%":[196],"respectively,":[202],"according":[207],"Jaccard":[210],"similarity":[211],"coefficient.":[212],"Our":[213],"successfully":[216],"used":[217],"V":[221],"should":[225],"serve":[226],"valuable":[229],"resource":[230],"research":[234],"community.Database":[235],"URL:":[236],"http://www.biocreative.org/tasks/biocreative-v/track-3-cdr/.":[237]},"counts_by_year":[{"year":2026,"cited_by_count":32},{"year":2025,"cited_by_count":94},{"year":2024,"cited_by_count":147},{"year":2023,"cited_by_count":155},{"year":2022,"cited_by_count":140},{"year":2021,"cited_by_count":138},{"year":2020,"cited_by_count":90},{"year":2019,"cited_by_count":47},{"year":2018,"cited_by_count":28},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":4}],"updated_date":"2026-07-06T08:01:05.025921","created_date":"2025-10-10T00:00:00"}