{"id":"https://openalex.org/W2344452825","doi":"https://doi.org/10.1093/database/baw054","title":"UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation","display_name":"UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2344452825","doi":"https://doi.org/10.1093/database/baw054","mag":"2344452825","pmid":"https://pubmed.ncbi.nlm.nih.gov/27114492"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw054/8224140/baw054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw054/8224140/baw054.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079500481","display_name":"Van\u2010Nui Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115718","display_name":"Thai Nguyen University","ror":"https://ror.org/02128gy91","country_code":"VN","type":"education","lineage":["https://openalex.org/I4210115718"]},{"id":"https://openalex.org/I4405263268","display_name":"Thai Nguyen University of Information and Communication Technology","ror":"https://ror.org/04gv3mr75","country_code":"VN","type":"education","lineage":["https://openalex.org/I4405263268"]},{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW","VN"],"is_corresponding":false,"raw_author_name":"Van-Nui Nguyen","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan University of Information and Communication Technology, Thai Nguyen University, Vietnam and","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","University of Information and Communication Technology, Thai Nguyen University, Vietnam and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan University of Information and Communication Technology, Thai Nguyen University, Vietnam and","institution_ids":["https://openalex.org/I4405263268","https://openalex.org/I99908691"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"University of Information and Communication Technology, Thai Nguyen University, Vietnam and","institution_ids":["https://openalex.org/I4210115718","https://openalex.org/I4405263268"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101875147","display_name":"Kai\u2010Yao Huang","orcid":"https://orcid.org/0000-0001-9855-1035"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kai-Yao Huang","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102950025","display_name":"Julia Weng","orcid":"https://orcid.org/0000-0003-0127-0945"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Julia Tzu-Ya Weng","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044292096","display_name":"K. Robert Lai","orcid":"https://orcid.org/0000-0002-3365-3927"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"K. Robert Lai","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan francis@saturn.yzu.edu.tw","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan francis@saturn.yzu.edu.tw","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan francis@saturn.yzu.edu.tw","Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan francis@saturn.yzu.edu.tw","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]},{"raw_affiliation_string":"Innovation Center for Big Data and Digital Convergence, Yuan Ze University, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044292096","https://openalex.org/A5045675277"],"corresponding_institution_ids":["https://openalex.org/I99908691"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1213,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.782899,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2016","issue":null,"first_page":"baw054","last_page":"baw054"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.6402596235275269},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.5633427500724792},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.35059094429016113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3400493264198303},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33227527141571045},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24526220560073853},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10508373379707336},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09087273478507996},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.08798804879188538}],"concepts":[{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.6402596235275269},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.5633427500724792},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.35059094429016113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3400493264198303},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33227527141571045},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24526220560073853},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10508373379707336},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09087273478507996},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.08798804879188538}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057149","descriptor_name":"Ubiquitinated Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057149","descriptor_name":"Ubiquitinated Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057149","descriptor_name":"Ubiquitinated Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw054/8224140/baw054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27114492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27114492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4843525","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4843525","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw054","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw054","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw054","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw054","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw054/8224140/baw054.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1576984307","display_name":null,"funder_award_id":"2221-E-155","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"}],"funders":[{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2344452825.pdf","grobid_xml":"https://content.openalex.org/works/W2344452825.grobid-xml"},"referenced_works_count":93,"referenced_works":["https://openalex.org/W1270834676","https://openalex.org/W1517270567","https://openalex.org/W1565276997","https://openalex.org/W1566952502","https://openalex.org/W1568400197","https://openalex.org/W1709815505","https://openalex.org/W1832030339","https://openalex.org/W1963967499","https://openalex.org/W1965995197","https://openalex.org/W1970039616","https://openalex.org/W1971575429","https://openalex.org/W1975206161","https://openalex.org/W1976041483","https://openalex.org/W1984309491","https://openalex.org/W1984537356","https://openalex.org/W1988031203","https://openalex.org/W1988281953","https://openalex.org/W1989119894","https://openalex.org/W1998767819","https://openalex.org/W1999212541","https://openalex.org/W2004250476","https://openalex.org/W2005750837","https://openalex.org/W2008708467","https://openalex.org/W2008798771","https://openalex.org/W2009263681","https://openalex.org/W2015291446","https://openalex.org/W2015859579","https://openalex.org/W2016088798","https://openalex.org/W2023967363","https://openalex.org/W2034890309","https://openalex.org/W2036662864","https://openalex.org/W2041877620","https://openalex.org/W2046758679","https://openalex.org/W2049987290","https://openalex.org/W2050043175","https://openalex.org/W2052779687","https://openalex.org/W2056775476","https://openalex.org/W2062510288","https://openalex.org/W2063866450","https://openalex.org/W2064850779","https://openalex.org/W2067343115","https://openalex.org/W2075319133","https://openalex.org/W2080221075","https://openalex.org/W2080553628","https://openalex.org/W2081120309","https://openalex.org/W2082106887","https://openalex.org/W2083665788","https://openalex.org/W2085302194","https://openalex.org/W2086343926","https://openalex.org/W2091352656","https://openalex.org/W2097606916","https://openalex.org/W2098376021","https://openalex.org/W2102621836","https://openalex.org/W2103237568","https://openalex.org/W2103305337","https://openalex.org/W2104804534","https://openalex.org/W2106391842","https://openalex.org/W2107644675","https://openalex.org/W2115666559","https://openalex.org/W2118379230","https://openalex.org/W2119185411","https://openalex.org/W2121417968","https://openalex.org/W2122863289","https://openalex.org/W2129137060","https://openalex.org/W2129448726","https://openalex.org/W2131848047","https://openalex.org/W2134095164","https://openalex.org/W2135278768","https://openalex.org/W2142529984","https://openalex.org/W2143538182","https://openalex.org/W2146253911","https://openalex.org/W2148853951","https://openalex.org/W2149376055","https://openalex.org/W2150123812","https://openalex.org/W2156443053","https://openalex.org/W2156899368","https://openalex.org/W2157519312","https://openalex.org/W2158266834","https://openalex.org/W2159482845","https://openalex.org/W2166987747","https://openalex.org/W2167332950","https://openalex.org/W2168708922","https://openalex.org/W2170441710","https://openalex.org/W2172012754","https://openalex.org/W2172609270","https://openalex.org/W2281257803","https://openalex.org/W2413266905","https://openalex.org/W4211142565","https://openalex.org/W4237686819","https://openalex.org/W4247074653","https://openalex.org/W6630924711","https://openalex.org/W6633829390","https://openalex.org/W6675851444"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2061722173","https://openalex.org/W3152173028","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W3145957975","https://openalex.org/W2025542028"],"abstract_inverted_index":{"Protein":[0],"ubiquitylation":[1,37,45,78,101,154,175],"catalyzed":[2],"by":[3,80,218,250],"E3":[4,84,116,135,206,230,251],"ubiquitin":[5],"ligases":[6,117,136,207],"are":[7,248],"crucial":[8],"in":[9,63,194,211],"the":[10,18,33,53,66,131,151,174,189,212,242,281],"regulation":[11,196,213],"of":[12,21,27,36,44,55,59,76,108,142,153,176,192,214,263],"many":[13],"cellular":[14],"processes.":[15],"Owing":[16],"to":[17,40,71,169],"high":[19],"throughput":[20],"mass":[22],"spectrometry-based":[23],"proteomics,":[24],"a":[25,41,73,140,171,228],"number":[26],"methods":[28],"have":[29,112],"been":[30],"developed":[31,70],"for":[32,52,60,150,173,227,259],"experimental":[34],"determination":[35],"sites,":[38],"leading":[39],"large":[42],"collection":[43],"data.":[46],"However,":[47],"there":[48],"exist":[49],"no":[50],"resources":[51],"exploration":[54,152],"E3-ligase-associated":[56],"regulatory":[57,132],"networks":[58,79,133,155],"ubiquitylated":[61,86,106,138,246],"proteins":[62,107,178,217,247],"humans.":[64,109],"Therefore,":[65],"UbiNet":[67,94,149,166,200,222,253,267],"database":[68,268],"was":[69,167],"provide":[72],"full":[74],"investigation":[75],"protein":[77,219,264],"incorporating":[81],"experimentally":[82,99],"verified":[83,100],"ligases,":[85,252],"substrates":[87,226],"and":[88,124,137,180,204,235,283],"protein-protein":[89],"interactions":[90],"(PPIs).":[91],"To":[92,129],"date,":[93],"has":[95],"accumulated":[96],"43":[97],"948":[98],"sites":[102],"from":[103],"14":[104],"692":[105],"Additionally,":[110],"we":[111],"manually":[113],"curated":[114],"499":[115],"as":[118,120],"well":[119,198],"two":[121],"E1":[122],"activating":[123],"46":[125],"E2":[126],"conjugating":[127],"enzymes.":[128],"delineate":[130],"among":[134],"proteins,":[139],"total":[141],"430":[143],"530":[144],"PPIs":[145,234],"were":[146],"integrated":[147],"into":[148],"with":[156,185,280],"an":[157,256],"interactive":[158],"network":[159],"viewer.":[160],"A":[161],"case":[162],"study":[163],"demonstrated":[164],"that":[165,182,202],"able":[168],"decipher":[170],"scheme":[172],"tumor":[177,216],"p63":[179],"p73":[181],"is":[183,197,269,277],"consistent":[184],"their":[186],"functions.":[187],"Although":[188],"essential":[190],"role":[191],"Mdm2":[193,203],"p53":[195],"studied,":[199],"revealed":[201],"additional":[205],"might":[208],"be":[209],"implicated":[210],"other":[215],"ubiquitylation.":[220,265],"Moreover,":[221],"could":[223],"identify":[224],"potential":[225],"specific":[229],"ligase":[231],"based":[232],"on":[233],"substrate":[236],"motifs.":[237],"With":[238],"limited":[239],"knowledge":[240],"about":[241],"mechanisms":[243],"through":[244],"which":[245],"regulated":[249],"offers":[254],"users":[255],"effective":[257],"means":[258],"conducting":[260],"preliminary":[261],"analyses":[262],"The":[266,275],"now":[270],"freely":[271],"accessible":[272],"via":[273],"http://csb.cse.yzu.edu.tw/UbiNet/":[274],"content":[276],"regularly":[278],"updated":[279],"literature":[282],"newly":[284],"released":[285],"data.Database":[286],"URL:":[287],"http://csb.cse.yzu.edu.tw/UbiNet/.":[288]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
