{"id":"https://openalex.org/W2339107443","doi":"https://doi.org/10.1093/database/baw046","title":"Extraction of chemical-induced diseases using prior knowledge and textual information","display_name":"Extraction of chemical-induced diseases using prior knowledge and textual information","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2339107443","doi":"https://doi.org/10.1093/database/baw046","mag":"2339107443","pmid":"https://pubmed.ncbi.nlm.nih.gov/27081155"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw046","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw046/8223964/baw046.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw046/8223964/baw046.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037339423","display_name":"Ewoud Pons","orcid":"https://orcid.org/0000-0002-5219-9790"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ewoud Pons","raw_affiliation_strings":["Department of Medical Informatics Department of Radiology, Erasmus University Medical Center, 3000\u2009DR Rotterdam, PO Box 2040, The Netherlands","Department of Radiology, Erasmus University Medical Center, 3000\u2009DR Rotterdam, PO Box 2040, The Netherlands","Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics Department of Radiology, Erasmus University Medical Center, 3000\u2009DR Rotterdam, PO Box 2040, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Department of Radiology, Erasmus University Medical Center, 3000\u2009DR Rotterdam, PO Box 2040, The Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051448781","display_name":"Benedikt Becker","orcid":"https://orcid.org/0000-0002-0819-8344"},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Benedikt F.H. Becker","raw_affiliation_strings":["Department of Medical Informatics b.becker@erasmusmc.nl","Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics b.becker@erasmusmc.nl","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023359433","display_name":"Saber A. Akhondi","orcid":"https://orcid.org/0000-0003-2855-5633"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Saber A. Akhondi","raw_affiliation_strings":["Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048053757","display_name":"Zubair Afzal","orcid":"https://orcid.org/0000-0001-7812-2399"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zubair Afzal","raw_affiliation_strings":["Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053857782","display_name":"Erik M. van Mulligen","orcid":"https://orcid.org/0000-0003-1377-9386"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Erik M. van Mulligen","raw_affiliation_strings":["Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005077862","display_name":"Jan A. Kors","orcid":"https://orcid.org/0000-0002-4929-026X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jan A. Kors","raw_affiliation_strings":["Department of Medical Informatics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.527,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.94928533,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw046","last_page":"baw046"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9480999708175659,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7676124572753906},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.6098625063896179},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5857492089271545},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5754062533378601},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5703011751174927},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.568517804145813},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.555781364440918},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5258451104164124},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4885135889053345},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.45698100328445435},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.45403122901916504},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.44628000259399414},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4198138117790222}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7676124572753906},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.6098625063896179},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5857492089271545},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5754062533378601},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5703011751174927},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.568517804145813},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.555781364440918},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5258451104164124},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4885135889053345},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.45698100328445435},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.45403122901916504},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.44628000259399414},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4198138117790222},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000209","qualifier_name":"etiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D015386","descriptor_name":"Hazardous Substances","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/database/baw046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw046","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw046/8223964/baw046.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27081155","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27081155","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.eur.nl:openaire/fe0d9b09-9088-4b21-b35a-28f1b9f0fff5","is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/fe0d9b09-9088-4b21-b35a-28f1b9f0fff5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pons, E, Becker, B, Ahmad Akhondi, S, Afzal, M, van Mulligen, E & Kors, J 2016, 'Extraction of chemical-induced diseases using prior knowledge and textual information', Database-the Journal of Biological Databases and Curation. https://doi.org/10.1093/database/baw046","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:eur:oai:repub.eur.nl:96371","is_oa":true,"landing_page_url":"http://hdl.handle.net/1765/96371","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3802978","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4831722","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw046","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw046","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.eur.nl:publications/fe0d9b09-9088-4b21-b35a-28f1b9f0fff5","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:repub.eur.nl:96371","is_oa":true,"landing_page_url":"http://repub.eur.nl/pub/96371","pdf_url":null,"source":{"id":"https://openalex.org/S4306400997","display_name":"RePub (Erasmus University, Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database vol. 2016","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/baw046","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw046","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw046/8223964/baw046.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320307770","display_name":"AstraZeneca","ror":"https://ror.org/04r9x1a08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2339107443.pdf","grobid_xml":"https://content.openalex.org/works/W2339107443.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1971048089","https://openalex.org/W1991154713","https://openalex.org/W1997680883","https://openalex.org/W2019707847","https://openalex.org/W2024862171","https://openalex.org/W2039612385","https://openalex.org/W2040610660","https://openalex.org/W2052217781","https://openalex.org/W2091155135","https://openalex.org/W2104006813","https://openalex.org/W2112946624","https://openalex.org/W2115871101","https://openalex.org/W2117446654","https://openalex.org/W2129038679","https://openalex.org/W2129767020","https://openalex.org/W2138768461","https://openalex.org/W2142016317","https://openalex.org/W2145870108","https://openalex.org/W2153138487","https://openalex.org/W2159583324","https://openalex.org/W2167504703","https://openalex.org/W2169491861","https://openalex.org/W2174118363","https://openalex.org/W2522519459","https://openalex.org/W6648116614","https://openalex.org/W6677115753","https://openalex.org/W6684363605"],"related_works":["https://openalex.org/W2368651715","https://openalex.org/W4379379356","https://openalex.org/W2188844526","https://openalex.org/W1593420896","https://openalex.org/W147166030","https://openalex.org/W3081459453","https://openalex.org/W3002472320","https://openalex.org/W2993873509","https://openalex.org/W2549855657","https://openalex.org/W2339107443"],"abstract_inverted_index":{"We":[0,100],"describe":[1,101],"our":[2,44,59,121],"approach":[3],"to":[4],"the":[5,11,39,56,93,96,102,115,130,147],"chemical-disease":[6],"relation":[7],"(CDR)":[8],"task":[9,17],"in":[10,49,95,150],"BioCreative":[12],"V":[13],"challenge.":[14],"The":[15],"CDR":[16,97,116],"consists":[18],"of":[19,31,126,134,146],"two":[20],"subtasks:":[21],"automatic":[22],"disease-named":[23],"entity":[24],"recognition":[25,46],"and":[26,29,84,86,88,107,156],"normalization":[27],"(DNER),":[28],"extraction":[30],"chemical-induced":[32],"diseases":[33],"(CIDs)":[34],"from":[35,75,92],"Medline":[36],"abstracts.":[37],"For":[38,55,119,128],"DNER":[40,155],"subtask,":[41,58],"we":[42,62],"used":[43],"concept":[45],"tool":[47],"Peregrine,":[48],"combination":[50],"with":[51],"several":[52],"optimization":[53],"steps.":[54],"CID":[57],"system,":[60],"which":[61,136],"named":[63],"RELigator,":[64],"was":[65],"trained":[66],"on":[67,114],"a":[68,76,164],"rich":[69],"feature":[70],"set,":[71],"comprising":[72],"features":[73,90],"derived":[74,91],"graph":[77],"database":[78],"containing":[79],"prior":[80],"knowledge":[81],"about":[82],"chemicals":[83],"diseases,":[85],"linguistic":[87],"statistical":[89],"abstracts":[94],"training":[98],"corpus.":[99],"systems":[103,148],"that":[104],"were":[105],"developed":[106],"present":[108],"evaluation":[109],"results":[110],"for":[111,154,158],"both":[112],"subtasks":[113],"test":[117],"set.":[118],"DNER,":[120],"Peregrine":[122],"system":[123,131],"reached":[124],"anF-score":[125,133],"0.757.":[127],"CID,":[129],"achieved":[132],"0.526,":[135],"ranked":[137],"second":[138],"among":[139],"18":[140],"participating":[141],"teams.":[142],"Several":[143],"post-challenge":[144],"modifications":[145],"resulted":[149],"substantially":[151],"improvedF-scores":[152],"(0.828":[153],"0.602":[157],"CID).":[159],"RELigator":[160],"is":[161],"available":[162],"as":[163],"web":[165],"service":[166],"athttp://biosemantics.org/index.php/software/religator.":[167]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}