{"id":"https://openalex.org/W2341204806","doi":"https://doi.org/10.1093/database/baw045","title":"Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource","display_name":"Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2341204806","doi":"https://doi.org/10.1093/database/baw045","mag":"2341204806","pmid":"https://pubmed.ncbi.nlm.nih.gov/27087306"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw045/17473585/baw045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw045/17473585/baw045.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039361520","display_name":"Megan Druce","orcid":null},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Megan Druce","raw_affiliation_strings":["Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa","Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa","Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":[]},{"raw_affiliation_string":"Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]},{"raw_affiliation_string":"Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000732341","display_name":"Chantal Hulo","orcid":"https://orcid.org/0000-0001-8176-7999"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Chantal Hulo","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072404288","display_name":"Patrick Masson","orcid":"https://orcid.org/0000-0001-7646-0052"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Patrick Masson","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024116780","display_name":"Paula Sommer","orcid":"https://orcid.org/0000-0001-6810-5587"},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Paula Sommer","raw_affiliation_strings":["Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"Division of Genetics, School of Life Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091658610","display_name":"Philippe Le Mercier","orcid":"https://orcid.org/0000-0001-8528-090X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Philippe Le Mercier","raw_affiliation_strings":["Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051373841","display_name":"T\u00falio de Oliveira","orcid":"https://orcid.org/0000-0002-3027-5254"},"institutions":[{"id":"https://openalex.org/I95023434","display_name":"University of KwaZulu-Natal","ror":"https://ror.org/04qzfn040","country_code":"ZA","type":"education","lineage":["https://openalex.org/I95023434"]}],"countries":["ZA"],"is_corresponding":true,"raw_author_name":"Tulio De Oliveira","raw_affiliation_strings":["Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa tuliodna@gmail.com tdeoliveira@africacentre.ac.za","Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa"],"affiliations":[{"raw_affiliation_string":"Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa tuliodna@gmail.com tdeoliveira@africacentre.ac.za","institution_ids":[]},{"raw_affiliation_string":"Africa Centre for Population Health, School of Laboratory Medicine and Medical Sciences, Nelson R. Mandela School of Medicine, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa","institution_ids":["https://openalex.org/I95023434"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5051373841"],"corresponding_institution_ids":["https://openalex.org/I95023434"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9006,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.74589547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2016","issue":null,"first_page":"baw045","last_page":"baw045"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.7975040078163147},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7546200752258301},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5546000003814697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5384758114814758},{"id":"https://openalex.org/keywords/human-immunodeficiency-virus","display_name":"Human immunodeficiency virus (HIV)","score":0.5112109184265137},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49761655926704407},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.4973740875720978},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.48664841055870056},{"id":"https://openalex.org/keywords/viral-replication","display_name":"Viral replication","score":0.44565606117248535},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4404742121696472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3787727653980255},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.36849114298820496},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.33580654859542847},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31998568773269653},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2389722764492035},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08862721920013428}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.7975040078163147},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7546200752258301},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5546000003814697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5384758114814758},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.5112109184265137},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49761655926704407},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.4973740875720978},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.48664841055870056},{"id":"https://openalex.org/C140704245","wikidata":"https://www.wikidata.org/wiki/Q3933202","display_name":"Viral replication","level":3,"score":0.44565606117248535},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4404742121696472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3787727653980255},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.36849114298820496},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.33580654859542847},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31998568773269653},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2389722764492035},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08862721920013428},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015497","descriptor_name":"HIV-1","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D015658","descriptor_name":"HIV Infections","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054884","descriptor_name":"Host-Pathogen Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw045/17473585/baw045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27087306","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27087306","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3803039","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4834208","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw045","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw045","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw045","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw045","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw045/17473585/baw045.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G4680958855","display_name":null,"funder_award_id":"MRC-RFA-UFSP-01-2013","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320321099","display_name":"Bundesamt f\u00fcr Gesundheit","ror":"https://ror.org/01qtc5416"},{"id":"https://openalex.org/F4320322812","display_name":"Inyuvesi Yakwazulu-Natali","ror":"https://ror.org/04qzfn040"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320335238","display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation","ror":"https://ror.org/01kw63t33"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2341204806.pdf","grobid_xml":"https://content.openalex.org/works/W2341204806.grobid-xml"},"referenced_works_count":106,"referenced_works":["https://openalex.org/W35389034","https://openalex.org/W1515906259","https://openalex.org/W1568374084","https://openalex.org/W1582864225","https://openalex.org/W1753464271","https://openalex.org/W1886007601","https://openalex.org/W1965436293","https://openalex.org/W1968419204","https://openalex.org/W1969924129","https://openalex.org/W1979451022","https://openalex.org/W1981440980","https://openalex.org/W1983073524","https://openalex.org/W1983411290","https://openalex.org/W1983503934","https://openalex.org/W1985288736","https://openalex.org/W1986384364","https://openalex.org/W1992174943","https://openalex.org/W1992984336","https://openalex.org/W1993897877","https://openalex.org/W1996024432","https://openalex.org/W1996789884","https://openalex.org/W1998204660","https://openalex.org/W2003527687","https://openalex.org/W2004508024","https://openalex.org/W2006958053","https://openalex.org/W2008088525","https://openalex.org/W2008815795","https://openalex.org/W2016207825","https://openalex.org/W2016475905","https://openalex.org/W2016913504","https://openalex.org/W2017551575","https://openalex.org/W2018153356","https://openalex.org/W2018158124","https://openalex.org/W2018879927","https://openalex.org/W2018960031","https://openalex.org/W2023420720","https://openalex.org/W2026218505","https://openalex.org/W2027048169","https://openalex.org/W2030017358","https://openalex.org/W2031441444","https://openalex.org/W2037131892","https://openalex.org/W2038985824","https://openalex.org/W2040894241","https://openalex.org/W2042486230","https://openalex.org/W2045186821","https://openalex.org/W2045605961","https://openalex.org/W2046854154","https://openalex.org/W2047145413","https://openalex.org/W2050664510","https://openalex.org/W2052373571","https://openalex.org/W2052899911","https://openalex.org/W2054621186","https://openalex.org/W2054888430","https://openalex.org/W2058169924","https://openalex.org/W2058675983","https://openalex.org/W2061938566","https://openalex.org/W2067127476","https://openalex.org/W2067888644","https://openalex.org/W2069923622","https://openalex.org/W2074443822","https://openalex.org/W2076243163","https://openalex.org/W2079517309","https://openalex.org/W2082737070","https://openalex.org/W2084460699","https://openalex.org/W2086429266","https://openalex.org/W2088713020","https://openalex.org/W2089051646","https://openalex.org/W2090699693","https://openalex.org/W2094745870","https://openalex.org/W2095839679","https://openalex.org/W2097080670","https://openalex.org/W2097244362","https://openalex.org/W2103706757","https://openalex.org/W2104511098","https://openalex.org/W2107158607","https://openalex.org/W2108012383","https://openalex.org/W2109046728","https://openalex.org/W2109455280","https://openalex.org/W2115726308","https://openalex.org/W2118090371","https://openalex.org/W2121753315","https://openalex.org/W2122523609","https://openalex.org/W2124253817","https://openalex.org/W2126134335","https://openalex.org/W2126940472","https://openalex.org/W2128260028","https://openalex.org/W2129105415","https://openalex.org/W2130448025","https://openalex.org/W2131222990","https://openalex.org/W2136996190","https://openalex.org/W2138834926","https://openalex.org/W2146191841","https://openalex.org/W2147582981","https://openalex.org/W2148643489","https://openalex.org/W2150538842","https://openalex.org/W2151472527","https://openalex.org/W2152681964","https://openalex.org/W2156643487","https://openalex.org/W2156829363","https://openalex.org/W2164461702","https://openalex.org/W2169790816","https://openalex.org/W2169824225","https://openalex.org/W2517763549","https://openalex.org/W4229728237","https://openalex.org/W4240528918","https://openalex.org/W6642367670"],"related_works":["https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2288906059","https://openalex.org/W2035528219","https://openalex.org/W1982829397","https://openalex.org/W2402478170","https://openalex.org/W2106414650","https://openalex.org/W2347437365","https://openalex.org/W1999412725","https://openalex.org/W4376862128"],"abstract_inverted_index":{"The":[0,229],"Human":[1],"Immunodeficiency":[2],"Virus":[3],"(HIV)":[4],"is":[5,52,56,142],"one":[6],"of":[7,35,80,137,206,244,266,273,291],"the":[8,12,47,81,100,114,130,174,177,207,263,271,288],"pathogens":[9],"that":[10,45,146],"cause":[11],"greatest":[13],"global":[14],"concern,":[15],"with":[16,23,189,253],"approximately":[17,217],"35":[18],"million":[19],"people":[20],"currently":[21],"infected":[22],"HIV.":[24],"Extensive":[25],"HIV":[26,36,50,55,84,178,239,268],"research":[27,151],"has":[28,213],"been":[29,214],"performed,":[30],"generating":[31],"a":[32,135,155,168,222,233,241,248,285],"large":[33],"amount":[34],"and":[37,54,85,180,191,247,270],"host":[38,48,86,101,115,181,254],"genomic":[39,264],"data.":[40],"However,":[41],"no":[42,143],"effective":[43,64,72],"vaccine":[44],"protects":[46],"from":[49],"infection":[51],"available":[53],"still":[57],"spreading":[58],"at":[59],"an":[60],"alarming":[61],"rate,":[62],"despite":[63],"antiretroviral":[65],"(ARV)":[66],"treatment.":[67],"In":[68,88,158],"order":[69,159],"to":[70,76,90,129,160],"develop":[71],"therapies,":[73],"we":[74,111,133,166],"need":[75],"expand":[77],"our":[78],"knowledge":[79,290],"interaction":[82,175,252],"between":[83,176],"proteins.":[87,182,255],"contrast":[89],"virus":[91,119],"proteins,":[92],"which":[93,212],"often":[94],"rapidly":[95],"evolve":[96],"drug":[97,275],"resistance":[98,276],"mutations,":[99],"proteins":[102,116,128],"are":[103],"essentially":[104],"invariant":[105],"within":[106],"all":[107],"humans.":[108],"Thus,":[109],"if":[110],"can":[112],"identify":[113],"needed":[117],"for":[118,237],"replication,":[120],"such":[121],"as":[122],"those":[123],"involved":[124],"in":[125,164,187,227,287],"transporting":[126],"viral":[127,139],"cell":[131],"surface,":[132],"have":[134],"chance":[136],"interrupting":[138],"replication.":[140],"There":[141],"proteome":[144,179],"resource":[145,169,184],"summarizes":[147],"this":[148,153,162],"interaction,":[149],"making":[150],"on":[152,173,250,262],"subject":[154],"difficult":[156],"enterprise.":[157],"fill":[161],"gap":[163,286],"knowledge,":[165],"curated":[167],"presents":[170],"detailed":[171],"annotation":[172],"Our":[183,199,256,278],"was":[185],"produced":[186],"collaboration":[188],"ViralZone":[190],"used":[192,203],"manual":[193],"curation":[194],"techniques":[195],"developed":[196],"by":[197,216],"UniProtKB/Swiss-Prot.":[198],"new":[200,235,257],"website":[201],"also":[202,259],"previous":[204],"annotations":[205],"BioAfrica":[208,280],"HIV-1":[209,281],"Proteome":[210,282],"Resource,":[211],"accessed":[215],"10":[218],"000":[219],"unique":[220],"users":[221],"year":[223],"since":[224],"its":[225,245,251],"inception":[226],"2005.":[228],"novel":[230],"features":[231],"include":[232],"dedicated":[234],"page":[236],"each":[238,267],"protein,":[240],"graphic":[242],"display":[243],"function":[246],"section":[249],"webpages":[258],"add":[260],"information":[261],"location":[265],"protein":[269],"position":[272],"ARV":[274],"mutations.":[277],"improved":[279],"Resource":[283],"fills":[284],"current":[289],"biocuration.Database":[292],"URL:http://www.bioafrica.net/proteomics/HIVproteome.html.":[293]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
