{"id":"https://openalex.org/W2334487059","doi":"https://doi.org/10.1093/database/baw042","title":"Chemical-induced disease relation extraction with various linguistic features","display_name":"Chemical-induced disease relation extraction with various linguistic features","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2334487059","doi":"https://doi.org/10.1093/database/baw042","mag":"2334487059","pmid":"https://pubmed.ncbi.nlm.nih.gov/27052618"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw042/8223888/baw042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw042/8223888/baw042.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052849527","display_name":"Jinghang Gu","orcid":"https://orcid.org/0000-0002-6335-0433"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinghang Gu","raw_affiliation_strings":["Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006678542","display_name":"Longhua Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Longhua Qian","raw_affiliation_strings":["Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006 qianlonghua@suda.edu.cn","Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006 qianlonghua@suda.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012794465","display_name":"Guodong Zhou","orcid":"https://orcid.org/0000-0002-7887-5099"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guodong Zhou","raw_affiliation_strings":["Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006"],"affiliations":[{"raw_affiliation_string":"Natural Language Processing Lab, School of Computer Science and Technology, Soochow University, 1 Shizi Street, Suzhou, China, 215006","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5006678542"],"corresponding_institution_ids":["https://openalex.org/I3923682"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.6551,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.93126901,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw042","last_page":"baw042"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.9138073921203613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8291889429092407},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7138223648071289},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.6492705345153809},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6172893643379211},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.6136792898178101},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.5977333188056946},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5838713049888611},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.4921662211418152},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45734453201293945},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3785858750343323},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23316505551338196},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.15957298874855042}],"concepts":[{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.9138073921203613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8291889429092407},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7138223648071289},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.6492705345153809},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6172893643379211},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.6136792898178101},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.5977333188056946},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5838713049888611},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.4921662211418152},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45734453201293945},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3785858750343323},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23316505551338196},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.15957298874855042},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008037","descriptor_name":"Linguistics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baw042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw042/8223888/baw042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:27052618","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27052618","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3793667","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4822558","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw042","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw042","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw042/8223888/baw042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2334487059.pdf","grobid_xml":"https://content.openalex.org/works/W2334487059.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W152958635","https://openalex.org/W1964670939","https://openalex.org/W1971048089","https://openalex.org/W1992442866","https://openalex.org/W2014139771","https://openalex.org/W2022279628","https://openalex.org/W2030531674","https://openalex.org/W2053238041","https://openalex.org/W2099188065","https://openalex.org/W2102575587","https://openalex.org/W2105481534","https://openalex.org/W2107005506","https://openalex.org/W2107598941","https://openalex.org/W2112543617","https://openalex.org/W2121652122","https://openalex.org/W2123442489","https://openalex.org/W2123579157","https://openalex.org/W2127147316","https://openalex.org/W2136640051","https://openalex.org/W2138768461","https://openalex.org/W2142016317","https://openalex.org/W2153138487","https://openalex.org/W2162965868","https://openalex.org/W2163303745","https://openalex.org/W2169491861","https://openalex.org/W2251872110","https://openalex.org/W2335791510","https://openalex.org/W2346452181","https://openalex.org/W6675914680","https://openalex.org/W6680411304"],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W2805262146","https://openalex.org/W2981341912","https://openalex.org/W4385734297","https://openalex.org/W4221160509","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W2547211086","https://openalex.org/W3114142812"],"abstract_inverted_index":{"Understanding":[0],"the":[1,28,48,74,80,110,118,193,199,205,229,235],"relations":[2,26,62,99,112,217],"between":[3,113,148,155,218],"chemicals":[4,219],"and":[5,18,33,130,139,164,170,181,196,220,232],"diseases":[6],"is":[7,31,38],"crucial":[8],"in":[9,63,150],"various":[10,108],"biomedical":[11,29],"tasks":[12],"such":[13,35],"as":[14,176],"new":[15,19],"drug":[16],"discoveries":[17],"therapy":[20],"developments.":[21],"While":[22],"manually":[23],"mining":[24],"these":[25,46],"from":[27,117,192,208],"literature":[30],"costly":[32],"time-consuming,":[34],"a":[36,52,85],"procedure":[37],"often":[39],"difficult":[40],"to":[41,65,97,106,133,152,198,211,214],"keep":[42],"up-to-date.":[43],"To":[44],"address":[45],"issues,":[47],"BioCreative-V":[49,81],"community":[50],"proposed":[51],"challenging":[53],"task":[54,78],"of":[55,58,162,226],"automatic":[56],"extraction":[57,77,141,147,154],"chemical-induced":[59],"disease":[60,165],"(CID)":[61],"order":[64],"benefit":[66],"biocuration.":[67],"This":[68],"article":[69],"describes":[70],"our":[71,159],"work":[72],"on":[73,79,228,234],"CID":[75],"relation":[76,146,153,177],"tasks.":[82],"We":[83,144],"built":[84],"machine":[86],"learning":[87],"based":[88],"system":[89,223],"that":[90],"utilized":[91],"simple":[92],"yet":[93],"effective":[94],"linguistic":[95],"features":[96],"extract":[98],"with":[100],"maximum":[101],"entropy":[102],"models.":[103],"In":[104,158],"addition":[105],"leveraging":[107],"features,":[109],"hypernym":[111],"entity":[114,156,240],"concepts":[115],"derived":[116],"Medical":[119],"Subject":[120],"Headings":[121],"(MeSH)-controlled":[122],"vocabulary":[123],"were":[124,173,190],"also":[125],"employed":[126],"during":[127],"both":[128,168,188],"training":[129,180,194],"testing":[131,200],"stages":[132],"obtain":[134],"more":[135],"accurate":[136],"classification":[137,185,206],"models":[138,186],"better":[140],"performance,":[142],"respectively.":[143,242],"demoted":[145],"entities":[149],"documents":[151],"mentions.":[157],"system,":[160],"pairs":[161],"chemical":[163],"mentions":[166],"at":[167,187],"intra-":[169],"inter-sentence":[171],"levels":[172,189],"first":[174],"constructed":[175],"instances":[178],"for":[179],"testing,":[182],"then":[183],"two":[184],"trained":[191],"examples":[195],"applied":[197],"examples.":[201],"Finally,":[202],"we":[203],"merged":[204],"results":[207],"mention":[209],"level":[210,213],"document":[212],"acquire":[215],"final":[216],"diseases.":[221],"Our":[222],"achieved":[224],"promisingF-scores":[225],"60.4%":[227],"development":[230],"dataset":[231,237],"58.3%":[233],"test":[236],"using":[238],"gold-standard":[239],"annotations,":[241],"Database":[243],"URL:https://github.com/JHnlp/BC5CIDTask.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
