{"id":"https://openalex.org/W2335932981","doi":"https://doi.org/10.1093/database/baw001","title":"Principles of metadata organization at the ENCODE data coordination center","display_name":"Principles of metadata organization at the ENCODE data coordination center","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2335932981","doi":"https://doi.org/10.1093/database/baw001","mag":"2335932981","pmid":"https://pubmed.ncbi.nlm.nih.gov/26980513"},"language":"en","primary_location":{"id":"doi:10.1093/database/baw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw001/8222603/baw001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw001/8222603/baw001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032016778","display_name":"Eurie L. Hong","orcid":"https://orcid.org/0000-0002-1775-4998"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eurie L. Hong","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041151354","display_name":"Cricket A. Sloan","orcid":"https://orcid.org/0000-0002-0693-6999"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cricket A. Sloan","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067468389","display_name":"Esther T. Chan","orcid":"https://orcid.org/0000-0002-2406-2623"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Esther T. Chan","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004031300","display_name":"Jean M. Davidson","orcid":"https://orcid.org/0000-0001-5951-5955"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean M. Davidson","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013449579","display_name":"Venkat S. Malladi","orcid":"https://orcid.org/0000-0002-0144-0564"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Venkat S. Malladi","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113912269","display_name":"J. Seth Strattan","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Seth Strattan","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074536424","display_name":"Benjamin C. Hitz","orcid":"https://orcid.org/0000-0003-3361-3594"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin C. Hitz","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110296333","display_name":"Idan Gabdank","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Idan Gabdank","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077834874","display_name":"Aditi K. Narayanan","orcid":"https://orcid.org/0000-0003-0627-1859"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aditi K. Narayanan","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041500680","display_name":"Marcus Ho","orcid":"https://orcid.org/0000-0002-5819-8342"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcus Ho","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085049971","display_name":"Brian T. Lee","orcid":"https://orcid.org/0000-0001-6382-9738"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian T. Lee","raw_affiliation_strings":["Center for Biomolecular Science and Engineering Santa Cruz, University of California, Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering Santa Cruz, University of California, Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101980602","display_name":"Laurence D. Rowe","orcid":"https://orcid.org/0000-0002-1420-0754"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Laurence D. Rowe","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112287653","display_name":"Timothy R. Dreszer","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy R. Dreszer","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108572131","display_name":"Greg R. Roe","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greg R. Roe","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029871989","display_name":"Nikhil R. Podduturi","orcid":"https://orcid.org/0000-0002-2592-2090"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikhil R. Podduturi","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079783845","display_name":"Forrest Y. Tanaka","orcid":"https://orcid.org/0000-0002-8649-6611"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Forrest Tanaka","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053283314","display_name":"Jason A. Hilton","orcid":"https://orcid.org/0000-0002-1196-4871"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jason A. Hilton","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058567429","display_name":"J. Michael Cherry","orcid":"https://orcid.org/0000-0001-9163-5180"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Michael Cherry","raw_affiliation_strings":["Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA cherry@stanford.edu","Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA cherry@stanford.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Genetics, Stanford University School of Medicine Department of Genetics, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":18,"corresponding_author_ids":["https://openalex.org/A5058567429"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.0677,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.94128241,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":"baw001","last_page":"baw001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.9556759595870972},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.906093955039978},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7456684708595276},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.7218881845474243},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.4736027717590332},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4672505855560303},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3854867219924927},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14101609587669373},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.11610457301139832},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08454364538192749}],"concepts":[{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.9556759595870972},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.906093955039978},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7456684708595276},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.7218881845474243},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.4736027717590332},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4672505855560303},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3854867219924927},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14101609587669373},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.11610457301139832},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08454364538192749},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003625","descriptor_name":"Data Collection","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009696","descriptor_name":"Nucleic Acids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/baw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw001/8222603/baw001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:26980513","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26980513","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt7m13p1g9","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/7m13p1g9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database, vol 2016","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3762923","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4792520","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/baw001","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/baw001","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/database/baw001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baw001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baw001/8222603/baw001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2335932981.pdf","grobid_xml":"https://content.openalex.org/works/W2335932981.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1544923801","https://openalex.org/W1757909678","https://openalex.org/W1964904043","https://openalex.org/W1991543373","https://openalex.org/W2009935171","https://openalex.org/W2076154138","https://openalex.org/W2084160423","https://openalex.org/W2084191969","https://openalex.org/W2096340575","https://openalex.org/W2096525273","https://openalex.org/W2102304447","https://openalex.org/W2106831214","https://openalex.org/W2116034137","https://openalex.org/W2117757143","https://openalex.org/W2118258530","https://openalex.org/W2124514674","https://openalex.org/W2130430745","https://openalex.org/W2130542009","https://openalex.org/W2140611297","https://openalex.org/W2141297584","https://openalex.org/W2147018385","https://openalex.org/W2148966035","https://openalex.org/W2149378423","https://openalex.org/W2160379721","https://openalex.org/W2231865019","https://openalex.org/W2259938310","https://openalex.org/W4237629094"],"related_works":["https://openalex.org/W1534949906","https://openalex.org/W2151972543","https://openalex.org/W2048135704","https://openalex.org/W1864352914","https://openalex.org/W2071978624","https://openalex.org/W2365800529","https://openalex.org/W2602757290","https://openalex.org/W2184044645","https://openalex.org/W2348772280","https://openalex.org/W2152917097"],"abstract_inverted_index":{"The":[0,27],"Encyclopedia":[1],"of":[2,29],"DNA":[3],"Elements":[4],"(ENCODE)":[5],"Data":[6],"Coordinating":[7],"Center":[8],"(DCC)":[9],"is":[10],"responsible":[11],"for":[12],"organizing,":[13],"describing":[14],"and":[15,44,57,71,93,106],"providing":[16],"access":[17],"to":[18,62,74,81,90],"the":[19,24,36,42,50,55,58,64,69,76,102,109,114],"diverse":[20,91],"data":[21,51,103],"generated":[22,53],"by":[23,108],"ENCODE":[25,77,110,115],"project.":[26],"description":[28],"these":[30,48],"data,":[31],"known":[32],"as":[33,40],"metadata,":[34],"includes":[35],"biological":[37],"sample":[38],"used":[39,61,73,107],"input,":[41],"protocols":[43],"assays":[45,92],"performed":[46],"on":[47],"samples,":[49],"files":[52],"from":[54],"results":[56],"computational":[59],"methods":[60],"analyze":[63],"data.":[65],"Here,":[66],"we":[67,99],"outline":[68],"principles":[70],"philosophy":[72],"define":[75],"metadata":[78,84],"in":[79,112],"order":[80],"create":[82],"a":[83],"standard":[85],"that":[86],"can":[87],"be":[88],"applied":[89],"multiple":[94],"genomic":[95],"projects.":[96],"In":[97],"addition,":[98],"present":[100],"how":[101],"are":[104],"validated":[105],"DCC":[111],"creating":[113],"Portal":[116],"(https://www.encodeproject.org/).":[117],"Database":[118],"URL:":[119],"www.encodeproject.org.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
