{"id":"https://openalex.org/W2263821617","doi":"https://doi.org/10.1093/database/bav114","title":"DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions","display_name":"DOMMINO 2.0: integrating structurally resolved protein-, RNA-, and DNA-mediated macromolecular interactions","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2263821617","doi":"https://doi.org/10.1093/database/bav114","mag":"2263821617","pmid":"https://pubmed.ncbi.nlm.nih.gov/26827237"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav114/17472222/bav114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav114/17472222/bav114.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041954281","display_name":"Xingyan Kuang","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingyan Kuang","raw_affiliation_strings":["Informatics Institute, University of Missouri, Columbia, MO, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Missouri, Columbia, MO, USA,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070316351","display_name":"Andi Dhroso","orcid":"https://orcid.org/0000-0002-6117-0607"},"institutions":[{"id":"https://openalex.org/I107077323","display_name":"Worcester Polytechnic Institute","ror":"https://ror.org/05ejpqr48","country_code":"US","type":"education","lineage":["https://openalex.org/I107077323"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andi Dhroso","raw_affiliation_strings":["Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA,","institution_ids":["https://openalex.org/I107077323"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101147774","display_name":"Jing Han","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Ginger Han","raw_affiliation_strings":["Informatics Institute, University of Missouri, Columbia, MO, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Informatics Institute, University of Missouri, Columbia, MO, USA,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013031415","display_name":"Chi\u2010Ren Shyu","orcid":"https://orcid.org/0000-0001-9197-9522"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chi-Ren Shyu","raw_affiliation_strings":["Department of Computer Science, University of Missouri, Columbia, MO, USA","Department of Electrical and Computer Engineering,","Informatics Institute, University of Missouri, Columbia, MO, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering,","institution_ids":[]},{"raw_affiliation_string":"Informatics Institute, University of Missouri, Columbia, MO, USA,","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022192689","display_name":"Dmitry Korkin","orcid":"https://orcid.org/0000-0002-3875-9085"},"institutions":[{"id":"https://openalex.org/I107077323","display_name":"Worcester Polytechnic Institute","ror":"https://ror.org/05ejpqr48","country_code":"US","type":"education","lineage":["https://openalex.org/I107077323"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dmitry Korkin","raw_affiliation_strings":["Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Bioinformatics and Computational Biology Program, Worcester Polytechnic Institute, Worcester, MA, USA,","institution_ids":["https://openalex.org/I107077323"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022192689"],"corresponding_institution_ids":["https://openalex.org/I107077323"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.7338,"has_fulltext":true,"cited_by_count":41,"citation_normalized_percentile":{"value":0.90018687,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2016","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/macromolecule","display_name":"Macromolecule","score":0.7830373048782349},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6229269504547119},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.619671106338501},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5480435490608215},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5346440672874451},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4657721221446991},{"id":"https://openalex.org/keywords/structural-bioinformatics","display_name":"Structural bioinformatics","score":0.42195743322372437},{"id":"https://openalex.org/keywords/macromolecular-crowding","display_name":"Macromolecular crowding","score":0.4190358519554138},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39844051003456116},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3753381371498108},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3712940216064453},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.22395333647727966},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11258736252784729}],"concepts":[{"id":"https://openalex.org/C204389451","wikidata":"https://www.wikidata.org/wiki/Q178593","display_name":"Macromolecule","level":2,"score":0.7830373048782349},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6229269504547119},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.619671106338501},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5480435490608215},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5346440672874451},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4657721221446991},{"id":"https://openalex.org/C69131567","wikidata":"https://www.wikidata.org/wiki/Q2068215","display_name":"Structural bioinformatics","level":3,"score":0.42195743322372437},{"id":"https://openalex.org/C181990884","wikidata":"https://www.wikidata.org/wiki/Q11396092","display_name":"Macromolecular crowding","level":3,"score":0.4190358519554138},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39844051003456116},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3753381371498108},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3712940216064453},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.22395333647727966},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11258736252784729}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014780","descriptor_name":"Viruses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046911","descriptor_name":"Macromolecular Substances","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bav114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav114/17472222/bav114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:26827237","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26827237","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:databa:2016/0/bav114","is_oa":false,"landing_page_url":"http://database.oxfordjournals.org/cgi/content/short/2016/0/bav114","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:4733329","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4733329","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav114","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav114","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav114/17472222/bav114.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2263821617.pdf","grobid_xml":"https://content.openalex.org/works/W2263821617.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W1525955028","https://openalex.org/W1966260649","https://openalex.org/W1977845138","https://openalex.org/W1979601325","https://openalex.org/W1979762151","https://openalex.org/W1983534198","https://openalex.org/W1984682563","https://openalex.org/W1985032660","https://openalex.org/W1989213989","https://openalex.org/W1992006348","https://openalex.org/W2000213161","https://openalex.org/W2001457899","https://openalex.org/W2003122343","https://openalex.org/W2006790766","https://openalex.org/W2016088798","https://openalex.org/W2016462615","https://openalex.org/W2016766290","https://openalex.org/W2027134752","https://openalex.org/W2030951801","https://openalex.org/W2037048830","https://openalex.org/W2045131720","https://openalex.org/W2046164706","https://openalex.org/W2052337414","https://openalex.org/W2064515831","https://openalex.org/W2067865468","https://openalex.org/W2068722030","https://openalex.org/W2076563297","https://openalex.org/W2083747978","https://openalex.org/W2084354696","https://openalex.org/W2085145974","https://openalex.org/W2085963663","https://openalex.org/W2091565674","https://openalex.org/W2096071764","https://openalex.org/W2098770192","https://openalex.org/W2100025044","https://openalex.org/W2101330776","https://openalex.org/W2106334971","https://openalex.org/W2108801304","https://openalex.org/W2111397525","https://openalex.org/W2115539119","https://openalex.org/W2122732537","https://openalex.org/W2122884883","https://openalex.org/W2124036707","https://openalex.org/W2124241917","https://openalex.org/W2128653811","https://openalex.org/W2128674962","https://openalex.org/W2130675570","https://openalex.org/W2134353698","https://openalex.org/W2136525667","https://openalex.org/W2140628140","https://openalex.org/W2140798893","https://openalex.org/W2141468602","https://openalex.org/W2141885858","https://openalex.org/W2144363281","https://openalex.org/W2145358391","https://openalex.org/W2145382385","https://openalex.org/W2152281406","https://openalex.org/W2152416668","https://openalex.org/W2153540299","https://openalex.org/W2154110104","https://openalex.org/W2154189169","https://openalex.org/W2162128823","https://openalex.org/W2171187461","https://openalex.org/W2422129218","https://openalex.org/W2495290358","https://openalex.org/W2887067015","https://openalex.org/W3106930452","https://openalex.org/W4210623056","https://openalex.org/W6717544727"],"related_works":["https://openalex.org/W2160718357","https://openalex.org/W592281890","https://openalex.org/W2005674839","https://openalex.org/W1770591670","https://openalex.org/W2007779811","https://openalex.org/W2124068105","https://openalex.org/W2972716842","https://openalex.org/W3099121037","https://openalex.org/W2387080196","https://openalex.org/W2021331553"],"abstract_inverted_index":{"Macromolecular":[0],"interactions":[1,21,30,75,84,119,155,180,217,242],"are":[2,88,205,229],"formed":[3],"between":[4,156,181],"proteins,":[5],"DNA":[6],"and":[7,18,56,92,189,195,209,224,227,253],"RNA":[8],"molecules.":[9],"Being":[10],"a":[11,35,98,135,145,173,214],"principle":[12],"building":[13],"block":[14],"in":[15,101,125,202],"macromolecular":[16,29,43,105,128],"assemblies":[17],"pathways,":[19],"the":[20,42,49,58,69,74,102,109,126,154,203],"underlie":[22],"most":[23],"of":[24,28,37,41,60,80,104,120,161],"cellular":[25],"functions.":[26],"Malfunctioning":[27],"is":[31,169],"also":[32],"linked":[33],"to":[34,47,142,240],"number":[36],"diseases.":[38],"Structural":[39],"knowledge":[40],"interaction":[44,112,252,254],"allows":[45],"one":[46,239],"understand":[48],"interaction's":[50],"mechanism,":[51],"determine":[52],"its":[53],"functional":[54],"implications":[55],"characterize":[57],"effects":[59],"genetic":[61],"variations,":[62],"such":[63],"as":[64],"single":[65],"nucleotide":[66],"polymorphisms,":[67],"on":[68,148,172],"interaction.":[70],"Unfortunately,":[71],"until":[72],"now":[73],"mediated":[76],"by":[77],"different":[78,121,245],"types":[79,122,160],"macromolecules,":[81],"e.g.":[82],"protein-protein":[83,149],"or":[85],"protein-DNA":[86],"interactions,":[87,150,194],"collected":[89],"into":[90],"individual":[91],"unrelated":[93],"structural":[94,111,118,136],"databases.":[95],"This":[96],"presents":[97],"significant":[99],"obstacle":[100],"analysis":[103],"interactions.":[106,198],"For":[107],"instance,":[108],"homogeneous":[110],"databases":[113],"prevent":[114],"scientists":[115],"from":[116,164],"studying":[117],"but":[123],"occurring":[124],"same":[127],"complex.":[129],"Here,":[130],"we":[131],"introduce":[132],"DOMMINO":[133,143,151,167],"2.0,":[134],"Database":[137,256],"Of":[138],"Macro-Molecular":[139],"INteractiOns.":[140],"Compared":[141],"1.0,":[144],"comprehensive":[146],"database":[147,204,232],"2.0":[152,168],"includes":[153,178],"all":[157],"three":[158,244],"basic":[159],"macromolecules":[162],"extracted":[163],"PDB":[165],"files.":[166],"automatically":[170],"updated":[171],"weekly":[174],"basis.":[175],"It":[176],"currently":[177],"\u223c1,040,000":[179],"two":[182],"polypeptide":[183],"subunits":[184],"(e.g.":[185],"domains,":[186,220],"peptides,":[187],"termini":[188],"interdomain":[190,221],"linkers),":[191],"\u223c43,000":[192],"RNA-mediated":[193],"\u223c12,000":[196],"DNA-mediated":[197],"All":[199],"protein":[200,219],"structures":[201],"annotated":[206],"using":[207],"SCOP":[208],"SUPERFAMILY":[210],"family":[211],"annotation.":[212],"As":[213],"result,":[215],"protein-mediated":[216],"involving":[218],"linkers,":[222],"C-":[223],"N-":[225],"termini,":[226],"peptides":[228],"identified.":[230],"Our":[231],"provides":[233],"an":[234],"intuitive":[235],"web":[236],"interface,":[237],"allowing":[238],"investigate":[241],"at":[243],"resolution":[246],"levels:":[247],"whole":[248],"subunit":[249],"network,":[250],"binary":[251],"interface.":[255],"URL:":[257],"http://dommino.org.":[258]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
