{"id":"https://openalex.org/W2205496875","doi":"https://doi.org/10.1093/database/bav104","title":"PhenoMiner: from text to a database of phenotypes associated with OMIM diseases","display_name":"PhenoMiner: from text to a database of phenotypes associated with OMIM diseases","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2205496875","doi":"https://doi.org/10.1093/database/bav104","mag":"2205496875","pmid":"https://pubmed.ncbi.nlm.nih.gov/26507285"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav104/16976386/bav104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav104/16976386/bav104.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073413742","display_name":"Nigel Collier","orcid":"https://orcid.org/0000-0002-7230-4164"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Nigel Collier","raw_affiliation_strings":["The University of Cambridge, Cambridge, CB3 9DB, UK, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, nhc30@cam.ac.uk","The University of Cambridge, Cambridge, CB3 9DB, UK,","European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The University of Cambridge, Cambridge, CB3 9DB, UK, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, nhc30@cam.ac.uk","institution_ids":[]},{"raw_affiliation_string":"The University of Cambridge, Cambridge, CB3 9DB, UK,","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, UK,","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011041769","display_name":"Tudor Groza","orcid":"https://orcid.org/0000-0003-2267-8333"},"institutions":[{"id":"https://openalex.org/I165143802","display_name":"University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Tudor Groza","raw_affiliation_strings":["Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia, School of ITEE, The University of Queensland, St. Lucia, QLD 4072, Australia","School of ITEE, The University of Queensland, St. Lucia, QLD 4072, Australia,","Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia, School of ITEE, The University of Queensland, St. Lucia, QLD 4072, Australia","institution_ids":[]},{"raw_affiliation_string":"School of ITEE, The University of Queensland, St. Lucia, QLD 4072, Australia,","institution_ids":["https://openalex.org/I165143802"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Sydney, NSW 2010, Australia,","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009950897","display_name":"Damian Smedley","orcid":"https://orcid.org/0000-0002-5836-9850"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Damian Smedley","raw_affiliation_strings":["Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK","Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK","institution_ids":[]},{"raw_affiliation_string":"Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK,","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"funder","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter N. Robinson","raw_affiliation_strings":["Institute for Medical Genetics and Human Genetics, Charit\u00e9-Universitatsmedizin Berlin, 13353 Berlin, Germany and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Genetics and Human Genetics, Charit\u00e9-Universitatsmedizin Berlin, 13353 Berlin, Germany and","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012061875","display_name":"Anika Oellrich","orcid":null},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anika Oellrich","raw_affiliation_strings":["Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK","Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK","institution_ids":[]},{"raw_affiliation_string":"Mouse Informatics Group, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK,","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["The Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Insight Centre for Data Analytics, National University of Ireland, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5073413742"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I87048295"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.3647,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.89082285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":"bav104","last_page":"bav104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omim-online-mendelian-inheritance-in-man","display_name":"OMIM : Online Mendelian Inheritance in Man","score":0.828790009021759},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.628015398979187},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46396031975746155},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4521139860153198},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36793053150177},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35652345418930054},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3002612590789795},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15044665336608887},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13829964399337769}],"concepts":[{"id":"https://openalex.org/C191791410","wikidata":"https://www.wikidata.org/wiki/Q241953","display_name":"OMIM : Online Mendelian Inheritance in Man","level":4,"score":0.828790009021759},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.628015398979187},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46396031975746155},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4521139860153198},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36793053150177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35652345418930054},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3002612590789795},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15044665336608887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13829964399337769},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001794","descriptor_name":"Blood Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001794","descriptor_name":"Blood Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001794","descriptor_name":"Blood Pressure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004032","descriptor_name":"Diet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D006973","descriptor_name":"Hypertension","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000503","qualifier_name":"physiopathology","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D007674","descriptor_name":"Kidney Diseases","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011922","descriptor_name":"Rats, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011922","descriptor_name":"Rats, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011922","descriptor_name":"Rats, Mutant Strains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012964","descriptor_name":"Sodium","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D012964","descriptor_name":"Sodium","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D012964","descriptor_name":"Sodium","qualifier_ui":"Q000652","qualifier_name":"urine","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013599","descriptor_name":"Systole","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013599","descriptor_name":"Systole","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013599","descriptor_name":"Systole","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020296","descriptor_name":"Animals, Congenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020296","descriptor_name":"Animals, Congenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020296","descriptor_name":"Animals, Congenic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D033481","descriptor_name":"Chromosomes, Mammalian","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bav104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav104/16976386/bav104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:26507285","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26507285","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:373875","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:3593400","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4622021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav104","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav104","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav104/16976386/bav104.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7470654869","display_name":"A framework for building dynamic knowledge bases in the biomedical domain","funder_award_id":"DE120100508","funder_id":"https://openalex.org/F4320334704","funder_display_name":"Australian Research Council"}],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2205496875.pdf","grobid_xml":"https://content.openalex.org/works/W2205496875.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W10376690","https://openalex.org/W98423455","https://openalex.org/W160147681","https://openalex.org/W192665053","https://openalex.org/W1483357098","https://openalex.org/W1507626491","https://openalex.org/W1530032857","https://openalex.org/W1555643513","https://openalex.org/W1996383859","https://openalex.org/W2012238095","https://openalex.org/W2022451103","https://openalex.org/W2025797510","https://openalex.org/W2029054018","https://openalex.org/W2033377040","https://openalex.org/W2033582794","https://openalex.org/W2034626816","https://openalex.org/W2047856504","https://openalex.org/W2048024098","https://openalex.org/W2103017472","https://openalex.org/W2106797966","https://openalex.org/W2111299816","https://openalex.org/W2118178163","https://openalex.org/W2119412782","https://openalex.org/W2119613819","https://openalex.org/W2123152121","https://openalex.org/W2124001239","https://openalex.org/W2126434293","https://openalex.org/W2128428340","https://openalex.org/W2136410628","https://openalex.org/W2141766660","https://openalex.org/W2152398020","https://openalex.org/W2157079123","https://openalex.org/W2158743996","https://openalex.org/W2159092541","https://openalex.org/W2160085517","https://openalex.org/W2163670493","https://openalex.org/W2163685645","https://openalex.org/W2187581821","https://openalex.org/W2250565570","https://openalex.org/W2613000335","https://openalex.org/W2915128229","https://openalex.org/W2916047525","https://openalex.org/W2916355958","https://openalex.org/W4206895564","https://openalex.org/W6600441966","https://openalex.org/W6603998084","https://openalex.org/W6628888145","https://openalex.org/W6678161781","https://openalex.org/W6682935434","https://openalex.org/W6683360535","https://openalex.org/W6691482527"],"related_works":["https://openalex.org/W4250615304","https://openalex.org/W1589164005","https://openalex.org/W2119412782","https://openalex.org/W4248234957","https://openalex.org/W2053767652","https://openalex.org/W3096901647","https://openalex.org/W4377014010","https://openalex.org/W4313396096","https://openalex.org/W3044103667","https://openalex.org/W4280623480"],"abstract_inverted_index":{"Analysis":[0,97],"of":[1,33,40,103,113,137,149],"scientific":[2],"and":[3,31,56,80,93,131,160,170],"clinical":[4],"phenotypes":[5,92,151],"reported":[6],"in":[7,25,128],"the":[8,21,29,38,75,100,104,117,132],"experimental":[9],"literature":[10],"has":[11],"been":[12],"curated":[13],"manually":[14],"to":[15,65,68,74,140],"build":[16],"high-quality":[17],"databases":[18],"such":[19],"as":[20,167],"Online":[22],"Mendelian":[23,95],"Inheritance":[24],"Man":[26],"(OMIM).":[27],"However,":[28],"identification":[30],"harmonization":[32],"phenotype":[34,83],"descriptions":[35],"struggles":[36],"with":[37,116],"diversity":[39],"human":[41,69],"expressivity.":[42],"We":[43,71,85],"introduce":[44],"a":[45,111,177],"novel":[46],"automated":[47],"extraction":[48],"approach":[49],"called":[50],"PhenoMiner":[51,73,150],"that":[52],"exploits":[53],"full":[54,147],"parsing":[55],"conceptual":[57],"analysis.":[58],"Apriori":[59],"association":[60],"mining":[61],"is":[62,165],"then":[63],"used":[64],"identify":[66],"relationships":[67],"diseases.":[70],"applied":[72],"BMC":[76],"open":[77],"access":[78],"collection":[79],"identified":[81,86],"13,636":[82],"candidates.":[84],"28,155":[87],"phenotype-disorder":[88,126,138,153],"hypotheses":[89],"covering":[90],"4898":[91],"1659":[94],"disorders.":[96],"showed:":[98],"(i)":[99],"semantic":[101],"distribution":[102],"extracted":[105],"terms":[106],"against":[107],"linked":[108,157],"ontologies;":[109],"(ii)":[110],"comparison":[112],"term":[114],"overlap":[115],"Human":[118],"Phenotype":[119],"Ontology":[120],"(HP);":[121],"(iii)":[122],"moderate":[123],"support":[124],"for":[125],"pairs":[127,139,143],"both":[129],"OMIM":[130],"literature;":[133],"(iv)":[134],"strong":[135],"associations":[136,154],"known":[141],"disease-genes":[142],"using":[144],"PhenoDigm.":[145],"The":[146],"list":[148],"(S1),":[152],"(S2),":[155],"association-filtered":[156],"data":[158,169],"(S3)":[159],"user":[161],"database":[162],"documentation":[163],"(S5)":[164],"available":[166],"supplementary":[168],"can":[171],"be":[172],"downloaded":[173],"at":[174],"http://github.com/nhcollier/PhenoMiner":[175],"under":[176],"Creative":[178],"Commons":[179],"Attribution":[180],"4.0":[181],"license.":[182],"Database":[183],"URL:":[184],"phenominer.mml.cam.ac.uk.":[185]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
