{"id":"https://openalex.org/W2278812662","doi":"https://doi.org/10.1093/database/bav089","title":"SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data","display_name":"SORTA: a system for ontology-based re-coding and technical annotation of biomedical phenotype data","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2278812662","doi":"https://doi.org/10.1093/database/bav089","mag":"2278812662","pmid":"https://pubmed.ncbi.nlm.nih.gov/26385205"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav089","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav089/16976332/bav089.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav089/16976332/bav089.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074082034","display_name":"Chao Pang","orcid":"https://orcid.org/0000-0001-9308-8790"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Chao Pang","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands, University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands, University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049462658","display_name":"Annet Sollie","orcid":"https://orcid.org/0000-0003-0281-3526"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Annet Sollie","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018454384","display_name":"Anna Sijtsma","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Anna Sijtsma","raw_affiliation_strings":["University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands","LifeLines Cohort Study and Biobank, Groningen, The Netherlands","University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"LifeLines Cohort Study and Biobank, Groningen, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087133067","display_name":"Dennis Hendriksen","orcid":"https://orcid.org/0000-0003-0417-625X"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Dennis Hendriksen","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112351884","display_name":"Bart Charbon","orcid":"https://orcid.org/0009-0007-6025-6859"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Bart Charbon","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089329963","display_name":"Mark de Haan","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Mark de Haan","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070081355","display_name":"Tommy de Boer","orcid":"https://orcid.org/0000-0002-4492-7225"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tommy de Boer","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034303336","display_name":"Fleur Kelpin","orcid":"https://orcid.org/0000-0003-1527-5130"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Fleur Kelpin","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090792968","display_name":"Jonathan Jetten","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jonathan Jetten","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050501995","display_name":"Joeri K. van der Velde","orcid":null},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Joeri K. van der Velde","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070116942","display_name":"Nynke Smidt","orcid":"https://orcid.org/0000-0002-2778-8841"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Nynke Smidt","raw_affiliation_strings":["University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands","University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","LifeLines Cohort Study and Biobank, Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"LifeLines Cohort Study and Biobank, Groningen, The Netherlands","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081115482","display_name":"Rolf H. Sijmons","orcid":"https://orcid.org/0000-0001-8446-2779"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rolf Sijmons","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033537614","display_name":"Hans L. Hillege","orcid":"https://orcid.org/0000-0001-7397-1148"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hans Hillege","raw_affiliation_strings":["University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Morris A. Swertz","raw_affiliation_strings":["University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands, University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands m.a.swertz@rug.nl","University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","LifeLines Cohort Study and Biobank, Groningen, The Netherlands","University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands, University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and LifeLines Cohort Study and Biobank, Groningen, The Netherlands m.a.swertz@rug.nl","institution_ids":["https://openalex.org/I1334415907"]},{"raw_affiliation_string":"University of Groningen, University Medical Center Groningen, Department of Epidemiology, Groningen, The Netherlands and","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]},{"raw_affiliation_string":"LifeLines Cohort Study and Biobank, Groningen, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"University of Groningen, University Medical Centre Groningen, Genomics Coordination Centre, Department of Genetics, Groningen, The Netherlands,","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5052368642"],"corresponding_institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.4098,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.89361279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":"bav089","last_page":"bav089"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8084404468536377},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6773097515106201},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6350803375244141},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5920134782791138},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5531995892524719},{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.49924182891845703},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4715302586555481},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4252394735813141},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.42003798484802246},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.4041222631931305},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37691807746887207},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33171629905700684},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.32042163610458374},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2751196622848511},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.25248950719833374},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23639711737632751},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.1416361927986145}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8084404468536377},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6773097515106201},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6350803375244141},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5920134782791138},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5531995892524719},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.49924182891845703},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4715302586555481},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4252394735813141},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.42003798484802246},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.4041222631931305},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37691807746887207},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33171629905700684},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.32042163610458374},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2751196622848511},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.25248950719833374},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23639711737632751},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.1416361927986145},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bav089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav089","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav089/16976332/bav089.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:26385205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26385205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.rug.nl:publications/142f9618-d285-4906-a580-889683ee8b99","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/142f9618-d285-4906-a580-889683ee8b99","pdf_url":"https://pure.rug.nl/ws/files/55020204/bav089.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Pang, C, Sollie, A, Sijtsma, A, Hendriksen, D, Charbon, B, Haan, M D, de Boer, T, Kelpin, F, Jetten, J, van der Velde, J K, Smidt, N, Sijmons, R, Hillege, H & Swertz, M A 2015, 'SORTA : a system for ontology-based re-coding and technical annotation of biomedical phenotype data', Database-The journal of biological databases and curation, vol. 2015, bav089. https://doi.org/10.1093/database/bav089","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4574036","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4574036","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"pmh:oai:pure.rug.nl:openaire/142f9618-d285-4906-a580-889683ee8b99","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/142f9618-d285-4906-a580-889683ee8b99","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Pang, C, Sollie, A, Sijtsma, A, Hendriksen, D, Charbon, B, Haan, M D, de Boer, T, Kelpin, F, Jetten, J, van der Velde, J K, Smidt, N, Sijmons, R, Hillege, H & Swertz, M A 2015, 'SORTA : a system for ontology-based re-coding and technical annotation of biomedical phenotype data', Database-The journal of biological databases and curation, vol. 2015, bav089. https://doi.org/10.1093/database/bav089","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/database/bav089","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav089","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav089/16976332/bav089.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4022969829","display_name":null,"funder_award_id":"184.021.007","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4402520198","display_name":"Biobank Standardisation and Harmonisation for Research Excellence in the European Union","funder_award_id":"261433","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7546909933","display_name":"Building data bridges between biological and medical infrastructures in Europe","funder_award_id":"284209","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7724334725","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2278812662.pdf","grobid_xml":"https://content.openalex.org/works/W2278812662.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1482134990","https://openalex.org/W1647671624","https://openalex.org/W1982801501","https://openalex.org/W1985741740","https://openalex.org/W2001496424","https://openalex.org/W2008411455","https://openalex.org/W2044751753","https://openalex.org/W2045065444","https://openalex.org/W2050118646","https://openalex.org/W2058490165","https://openalex.org/W2091729411","https://openalex.org/W2101848246","https://openalex.org/W2103516623","https://openalex.org/W2118100588","https://openalex.org/W2121227244","https://openalex.org/W2131660156","https://openalex.org/W2161693184","https://openalex.org/W2163261911","https://openalex.org/W2165612380","https://openalex.org/W2167520007","https://openalex.org/W2522519459","https://openalex.org/W2591744545","https://openalex.org/W2594903377","https://openalex.org/W2620406790","https://openalex.org/W4300022934","https://openalex.org/W6629040674","https://openalex.org/W6636915900","https://openalex.org/W6678277124","https://openalex.org/W6683904200","https://openalex.org/W6684531090","https://openalex.org/W6727304459"],"related_works":["https://openalex.org/W4388685083","https://openalex.org/W4206342372","https://openalex.org/W4313525345","https://openalex.org/W2102229151","https://openalex.org/W2608149786","https://openalex.org/W2138664789","https://openalex.org/W334115264","https://openalex.org/W22148886","https://openalex.org/W1794266373","https://openalex.org/W2150106658"],"abstract_inverted_index":{"There":[0],"is":[1,24,41,81],"an":[2,302],"urgent":[3],"need":[4],"to":[5,16,54,112,129,191,205,222,224],"standardize":[6],"the":[7,31,185,213,237,259,273],"semantics":[8],"of":[9,47,70,209,236,246,251,275],"biomedical":[10,145],"data":[11,33,53,78,122,157,283],"values,":[12],"such":[13,61],"as":[14,62,301],"phenotypes,":[15],"enable":[17],"comparative":[18],"and":[19,72,161,166,250,266,286],"integrative":[20],"analyses.":[21],"However,":[22],"it":[23,289],"unlikely":[25],"that":[26],"all":[27],"studies":[28],"will":[29,290],"use":[30,182],"same":[32],"collection":[34],"protocols.":[35],"As":[36],"a":[37,83,88,100,113,130,244,262,267],"result,":[38],"retrospective":[39],"standardization":[40],"often":[42],"required,":[43],"which":[44],"involves":[45],"matching":[46,164],"original":[48,121],"(unstructured":[49],"or":[50,58,108,117,142,300],"locally":[51,109],"coded)":[52],"widely":[55],"used":[56,189,220],"coding":[57,115,132,217],"ontology":[59,139],"systems":[60],"SNOMED":[63],"CT":[64],"(clinical":[65],"terms),":[66],"ICD-10":[67],"(International":[68],"Classification":[69],"Disease)":[71],"HPO":[73,227],"(Human":[74],"Phenotype":[75],"Ontology).":[76],"This":[77],"curation":[79],"process":[80,85],"usually":[82],"time-consuming":[84],"performed":[86],"by":[87,173],"human":[89,174,276],"expert.":[90],"To":[91],"help":[92],"mechanize":[93],"this":[94],"process,":[95],"we":[96,188,219,242,287],"have":[97],"developed":[98],"SORTA,":[99],"computer-aided":[101],"system":[102,116,133],"for":[103,155,293],"rapidly":[104],"encoding":[105],"free":[106,195],"text":[107,196],"coded":[110],"values":[111,123,197],"formal":[114],"ontology.":[118],"SORTA":[119,190,221,271,279],"matches":[120,171],"(uploaded":[124,134],"in":[125,135,180,248,253],"semicolon":[126],"delimited":[127],"format)":[128],"target":[131],"Excel":[136],"spreadsheet,":[137],"OWL":[138],"web":[140],"language":[141],"OBO":[143],"open":[144,303],"ontologies":[146],"format).":[147],"It":[148],"then":[149],"semi-":[150],"automatically":[151],"shortlists":[152,238],"candidate":[153],"codes":[154],"each":[156],"value":[158],"using":[159],"Lucene":[160],"n-gram":[162],"based":[163],"algorithms,":[165],"can":[167,280],"also":[168],"learn":[169],"from":[170,306],"chosen":[172],"experts.":[175],"We":[176],"evaluated":[177],"SORTA's":[178],"applicability":[179],"two":[181],"cases.":[183],"For":[184,212],"LifeLines":[186,249],"biobank,":[187],"recode":[192],"90":[193],"000":[194],"(including":[198],"5211":[199],"unique":[200],"values)":[201],"about":[202],"physical":[203],"exercise":[204],"MET":[206],"(Metabolic":[207],"Equivalent":[208],"Task)":[210],"codes.":[211],"CINEAS":[214],"clinical":[215],"symptom":[216],"system,":[218],"map":[223],"HPO,":[225],"enriching":[226],"when":[228],"necessary":[229],"(315":[230],"terms":[231],"matched":[232],"so":[233],"far).":[234],"Out":[235],"at":[239],"rank":[240],"1,":[241],"found":[243,258],"precision/recall":[245],"0.97/0.98":[247],"0.58/0.45":[252],"CINEAS.":[254],"More":[255],"importantly,":[256],"users":[257],"tool":[260],"both":[261],"major":[263],"time":[264],"saver":[265],"quality":[268],"improvement":[269],"because":[270],"reduced":[272],"chances":[274],"mistakes.":[277],"Thus,":[278],"dramatically":[281],"ease":[282],"(re)coding":[284],"tasks":[285],"believe":[288],"prove":[291],"useful":[292],"many":[294],"more":[295],"projects.":[296],"Database":[297],"URL:":[298],"http://molgenis.org/sorta":[299],"source":[304],"download":[305],"http://www.molgenis.org/wiki/SORTA.":[307]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":2}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
