{"id":"https://openalex.org/W2180674495","doi":"https://doi.org/10.1093/database/bav082","title":"Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data","display_name":"Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2180674495","doi":"https://doi.org/10.1093/database/bav082","mag":"2180674495"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav082","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav082/16976268/bav082.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav082/16976268/bav082.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087648864","display_name":"Zheng Zhao","orcid":"https://orcid.org/0000-0001-8945-9632"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Zhao","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101894898","display_name":"Jing Bai","orcid":"https://orcid.org/0000-0002-7011-5909"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Bai","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058294271","display_name":"Aiwei Wu","orcid":"https://orcid.org/0000-0001-8531-4815"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aiwei Wu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100344861","display_name":"Yuan Wang","orcid":"https://orcid.org/0000-0002-5692-2659"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Wang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077632077","display_name":"Jinwen Zhang","orcid":"https://orcid.org/0000-0001-8828-114X"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinwen Zhang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003723166","display_name":"Zishan Wang","orcid":"https://orcid.org/0000-0002-5980-4711"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zishan Wang","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100389127","display_name":"Yongsheng Li","orcid":"https://orcid.org/0000-0003-1914-0727"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yongsheng Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076495142","display_name":"Juan Xu","orcid":"https://orcid.org/0000-0002-3709-4165"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Juan Xu","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100445596","display_name":"Xia Li","orcid":"https://orcid.org/0000-0002-9794-2648"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China"],"affiliations":[{"raw_affiliation_string":"College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China","institution_ids":["https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5076495142","https://openalex.org/A5100389127","https://openalex.org/A5100445596"],"corresponding_institution_ids":["https://openalex.org/I156144747"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":6.209,"has_fulltext":false,"cited_by_count":130,"citation_normalized_percentile":{"value":0.97480054,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.7768769264221191},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6267845034599304},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5920655727386475},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.46355119347572327},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4626190960407257},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.45085611939430237},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40847399830818176},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20264700055122375},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.201812744140625},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.1508750021457672},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14017057418823242}],"concepts":[{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.7768769264221191},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6267845034599304},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5920655727386475},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.46355119347572327},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4626190960407257},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.45085611939430237},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40847399830818176},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20264700055122375},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.201812744140625},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.1508750021457672},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14017057418823242}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/database/bav082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav082","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav082/16976268/bav082.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3545888","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4565967","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav082","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav082/16976268/bav082.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2180674495.pdf","grobid_xml":"https://content.openalex.org/works/W2180674495.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1596937937","https://openalex.org/W1966397536","https://openalex.org/W1970741980","https://openalex.org/W1975847255","https://openalex.org/W1999574084","https://openalex.org/W2004307038","https://openalex.org/W2018151311","https://openalex.org/W2032183472","https://openalex.org/W2034784092","https://openalex.org/W2036402097","https://openalex.org/W2079588819","https://openalex.org/W2079983771","https://openalex.org/W2087528029","https://openalex.org/W2091130596","https://openalex.org/W2096465161","https://openalex.org/W2097065948","https://openalex.org/W2116168949","https://openalex.org/W2117977572","https://openalex.org/W2118258530","https://openalex.org/W2118260473","https://openalex.org/W2119726708","https://openalex.org/W2130479394","https://openalex.org/W2130687298","https://openalex.org/W2138370010","https://openalex.org/W2141458291","https://openalex.org/W2141831115","https://openalex.org/W2150926065","https://openalex.org/W2160333540","https://openalex.org/W2165697084","https://openalex.org/W2167663414","https://openalex.org/W2169777381","https://openalex.org/W6631828510","https://openalex.org/W6635654744","https://openalex.org/W6641705276","https://openalex.org/W6642742426","https://openalex.org/W6644344068","https://openalex.org/W6650535631","https://openalex.org/W6651264437","https://openalex.org/W6654963853","https://openalex.org/W6658549948","https://openalex.org/W6658854225","https://openalex.org/W6659382900","https://openalex.org/W6670383886","https://openalex.org/W6670440511","https://openalex.org/W6672367842","https://openalex.org/W6673146591","https://openalex.org/W6674364653","https://openalex.org/W6674712147","https://openalex.org/W6677625348","https://openalex.org/W6677626707","https://openalex.org/W6677801472","https://openalex.org/W6677907624","https://openalex.org/W6678869915","https://openalex.org/W6680142886","https://openalex.org/W6680900195","https://openalex.org/W6681046492","https://openalex.org/W6682206525","https://openalex.org/W6683873763","https://openalex.org/W6684389392","https://openalex.org/W6684701239","https://openalex.org/W6685347705"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W2588180461"],"abstract_inverted_index":{"Long":[0],"non-coding":[1],"RNAs":[2],"(lncRNAs)":[3],"are":[4,27,120,154],"emerging":[5],"as":[6,158,160],"key":[7],"regulators":[8],"of":[9,19,34,76,128,151],"diverse":[10],"biological":[11,25,228],"processes":[12],"and":[13,65,171,185,230],"diseases.":[14],"However,":[15],"the":[16,108,125,166,192],"combinatorial":[17,110,194,220],"effects":[18,111],"these":[20],"molecules":[21],"in":[22,89,112,131,180],"a":[23,54,77,113,148,161,214,233],"specific":[24,162],"function":[26],"poorly":[28],"understood.":[29],"Identifying":[30],"co-expressed":[31,73,83,173],"protein-coding":[32,74,84,174,186],"genes":[33,75,85],"lncRNAs":[35,130,170],"would":[36],"provide":[37],"ample":[38],"insight":[39],"into":[40,122],"lncRNA":[41,109,184,193,219],"functions.":[42],"To":[43],"facilitate":[44],"such":[45],"an":[46,207],"effort,":[47],"we":[48],"have":[49],"developed":[50],"Co-LncRNA,":[51],"which":[52,137,222],"is":[53,138],"web-based":[55,215],"computational":[56],"tool":[57,163],"that":[58,68,153],"allows":[59],"users":[60,179],"to":[61,164,190],"identify":[62],"GO":[63,115],"annotations":[64,116],"KEGG":[66,118],"pathways":[67,119,152],"may":[69],"be":[70,198,232],"affected":[71],"by":[72,124,140,156],"single":[78],"or":[79,117,134],"multiple":[80,129,135],"lncRNAs.":[81],"LncRNA":[82],"were":[86],"first":[87],"identified":[88],"publicly":[90],"available":[91],"human":[92,203],"RNA-Seq":[93,204],"datasets,":[94,136],"including":[95],"241":[96],"datasets":[97,205],"across":[98],"6560":[99],"total":[100],"individuals":[101],"representing":[102],"28":[103],"tissue":[104],"types/cell":[105],"lines.":[106],"Then,":[107],"given":[114],"taken":[121],"account":[123],"simultaneous":[126],"analysis":[127],"user-selected":[132],"individual":[133],"realized":[139],"enrichment":[141],"analysis.":[142],"In":[143],"addition,":[144],"this":[145,237],"software":[146],"provides":[147,213],"graphical":[149],"overview":[150],"modulated":[155],"lncRNAs,":[157],"well":[159],"display":[165],"relevant":[167],"networks":[168],"between":[169],"their":[172,182,227],"genes.":[175],"Co-LncRNA":[176,212],"also":[177],"supports":[178],"uploading":[181],"own":[183],"gene":[187],"expression":[188],"profiles":[189],"investigate":[191],"effects.":[195],"It":[196],"will":[197],"continuously":[199],"updated":[200],"with":[201],"more":[202],"on":[206,226],"annual":[208],"basis.":[209],"Taken":[210],"together,":[211],"application":[216],"for":[217,236],"investigating":[218],"effects,":[221],"could":[223,231],"shed":[224],"light":[225],"roles":[229],"valuable":[234],"resource":[235],"community.":[238],"Database":[239],"URL:":[240],"http://www.bio-bigdata.com/Co-LncRNA/":[241]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":25},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":14},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}
