{"id":"https://openalex.org/W2295176399","doi":"https://doi.org/10.1093/database/bav057","title":"Construction of biological networks from unstructured information based on a semi-automated curation workflow","display_name":"Construction of biological networks from unstructured information based on a semi-automated curation workflow","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2295176399","doi":"https://doi.org/10.1093/database/bav057","mag":"2295176399","pmid":"https://pubmed.ncbi.nlm.nih.gov/26200752"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav057","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav057/20594514/bav057.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav057/20594514/bav057.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021007589","display_name":"Justyna Szostak","orcid":"https://orcid.org/0000-0002-6233-612X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Justyna Szostak","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032393679","display_name":"Sam Ansari","orcid":"https://orcid.org/0000-0003-0947-7019"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Sam Ansari","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090087547","display_name":"Sumit Madan","orcid":"https://orcid.org/0000-0001-9970-4144"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sumit Madan","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077378114","display_name":"Juliane Fluck","orcid":"https://orcid.org/0000-0003-1379-7023"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juliane Fluck","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011233293","display_name":"Marja Talikka","orcid":"https://orcid.org/0000-0001-8105-5756"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marja Talikka","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018867843","display_name":"Anita R. Iskandar","orcid":"https://orcid.org/0000-0001-9270-124X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Anita Iskandar","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000692090","display_name":"H\u00e9ctor De Le\u00f3n","orcid":"https://orcid.org/0000-0001-7627-5578"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Hector De Leon","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing, Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012278670","display_name":"Manuel C. Peitsch","orcid":"https://orcid.org/0000-0001-5324-359X"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Manuel C. Peitsch","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087038430","display_name":"Julia Hoeng","orcid":"https://orcid.org/0000-0001-5371-6801"},"institutions":[{"id":"https://openalex.org/I2800621710","display_name":"Philip Morris International (Switzerland)","ror":"https://ror.org/03z9zz970","country_code":"CH","type":"company","lineage":["https://openalex.org/I2800621710","https://openalex.org/I4210088192"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julia Hoeng","raw_affiliation_strings":["Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and"],"affiliations":[{"raw_affiliation_string":"Philip Morris International R&D, Philip Morris Products S.A., Quai Jeanrenaud 5, 2000 Neuch\u00e2tel, Switzerland and","institution_ids":["https://openalex.org/I2800621710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5032393679"],"corresponding_institution_ids":["https://openalex.org/I2800621710"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.7113,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.9077468,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":"bav057","last_page":"bav057"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8643474578857422},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8090659379959106},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.7710517048835754},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.4494572877883911},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4341604709625244},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4274653494358063},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3939613997936249},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33607929944992065},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27484893798828125},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.26239916682243347},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16061079502105713}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8643474578857422},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8090659379959106},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.7710517048835754},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.4494572877883911},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4341604709625244},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4274653494358063},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3939613997936249},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33607929944992065},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27484893798828125},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.26239916682243347},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16061079502105713},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018345","descriptor_name":"Mice, Knockout","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058226","descriptor_name":"Plaque, Atherosclerotic","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bav057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav057","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav057/20594514/bav057.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:26200752","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26200752","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:4600457","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5630939","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:fraunhofer.de:N-358544","is_oa":true,"landing_page_url":"http://publica.fraunhofer.de/documents/N-358544.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"Journal Article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/240938","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/240938","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/database/bav057","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav057","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav057/20594514/bav057.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8600000143051147,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2295176399.pdf","grobid_xml":"https://content.openalex.org/works/W2295176399.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W24812841","https://openalex.org/W1761407949","https://openalex.org/W1969709265","https://openalex.org/W1974944535","https://openalex.org/W1976029010","https://openalex.org/W1989842786","https://openalex.org/W1989921625","https://openalex.org/W1991204056","https://openalex.org/W1997245491","https://openalex.org/W1998116033","https://openalex.org/W2000941677","https://openalex.org/W2001488800","https://openalex.org/W2006225546","https://openalex.org/W2008429258","https://openalex.org/W2009405916","https://openalex.org/W2012953300","https://openalex.org/W2016434015","https://openalex.org/W2016639588","https://openalex.org/W2017424062","https://openalex.org/W2018934112","https://openalex.org/W2026563377","https://openalex.org/W2026759723","https://openalex.org/W2027602469","https://openalex.org/W2035356097","https://openalex.org/W2053634159","https://openalex.org/W2057083638","https://openalex.org/W2060871034","https://openalex.org/W2070063882","https://openalex.org/W2081859430","https://openalex.org/W2083869247","https://openalex.org/W2084408220","https://openalex.org/W2095279903","https://openalex.org/W2098486305","https://openalex.org/W2100587215","https://openalex.org/W2103308144","https://openalex.org/W2108791029","https://openalex.org/W2113630000","https://openalex.org/W2117024463","https://openalex.org/W2121802207","https://openalex.org/W2129113459","https://openalex.org/W2129934943","https://openalex.org/W2130790725","https://openalex.org/W2131114385","https://openalex.org/W2131397861","https://openalex.org/W2134032322","https://openalex.org/W2137400219","https://openalex.org/W2137825366","https://openalex.org/W2141869602","https://openalex.org/W2146486983","https://openalex.org/W2148130205","https://openalex.org/W2150908245","https://openalex.org/W2152285853","https://openalex.org/W2159675211","https://openalex.org/W2163411228","https://openalex.org/W2166164789","https://openalex.org/W2251279337","https://openalex.org/W2251669954","https://openalex.org/W2323768954","https://openalex.org/W2406229275","https://openalex.org/W2775486418","https://openalex.org/W4211016627","https://openalex.org/W6651939669","https://openalex.org/W6691558778","https://openalex.org/W6700948952","https://openalex.org/W7008264825"],"related_works":["https://openalex.org/W2407615899","https://openalex.org/W1977035219","https://openalex.org/W2189020697","https://openalex.org/W4226117346","https://openalex.org/W2105361480","https://openalex.org/W2725657302","https://openalex.org/W2295176399","https://openalex.org/W3148030980","https://openalex.org/W2294622562","https://openalex.org/W2807097602"],"abstract_inverted_index":{"Capture":[0],"and":[1,25,56,62,69,87,110,137,141,147,164,198,212,242,256,261,290],"representation":[2],"of":[3,16,84,89,244,284,292],"scientific":[4,60,139,263],"knowledge":[5,24,26,42,90,129,140,183,230,249,288],"in":[6,20,36,168,172],"a":[7,37,104,126,158,274],"structured":[8,229],"format":[9],"are":[10,30],"essential":[11],"to":[12,32,50,53,63,103,120,135,156,259],"improve":[13],"the":[14,67,98,101,143,162,186,210,225,239,253,282,285],"understanding":[15],"biological":[17,122,295],"mechanisms":[18,166],"involved":[19],"complex":[21],"diseases.":[22],"Biological":[23,72],"about":[27],"standardized":[28],"terminologies":[29],"difficult":[31],"capture":[33,136,260],"from":[34,59,91,185,231],"literature":[35,61,92],"usable":[38],"form.":[39],"A":[40,207],"semi-automated":[41,128,211,226,248],"extraction":[43,88,130,250,289],"workflow":[44,77,99,131,153,251,286],"is":[45,234,273],"presented":[46],"that":[47,116,132,160,270],"was":[48,133,154,180,271],"developed":[49,125],"allow":[51],"users":[52],"extract":[54],"causal":[55,275],"correlative":[57],"relationships":[58],"transcribe":[64],"them":[65,112],"into":[66,113],"computable":[68],"human":[70],"readable":[71],"Expression":[73],"Language":[74],"(BEL).":[75],"The":[76,152,178,189,265],"combines":[78],"state-of-the-art":[79],"linguistic":[80],"tools":[81],"for":[82,107,149,224,238,278,287],"recognition":[83],"various":[85],"entities":[86],"sources.":[93],"Unlike":[94],"most":[95],"other":[96],"approaches,":[97],"outputs":[100],"results":[102],"curation":[105,109,145,214,222,254],"interface":[106],"manual":[108],"converts":[111],"BEL":[114],"documents":[115],"can":[117],"be":[118],"compiled":[119],"form":[121],"networks.":[123,296],"We":[124],"new":[127,247],"designed":[134],"organize":[138,262],"reduce":[142],"required":[144,258],"skills":[146,255],"effort":[148,223,257],"this":[150],"task.":[151],"used":[155],"build":[157],"network":[159,179,194,269,276],"represents":[161],"cellular":[163],"molecular":[165],"implicated":[167],"atherosclerotic":[169,191,266],"plaque":[170,192,267],"destabilization":[171,193,268],"an":[173,235],"apolipoprotein-E-deficient":[174],"(ApoE(-/-))":[175],"mouse":[176],"model.":[177],"generated":[181,272],"using":[182],"extracted":[184],"primary":[187],"literature.":[188],"resultant":[190],"contains":[195],"304":[196],"nodes":[197],"743":[199],"edges":[200],"supported":[201],"by":[202],"33":[203],"PubMed":[204],"referenced":[205],"articles.":[206],"comparison":[208],"between":[209],"conventional":[213],"processes":[215],"showed":[216],"similar":[217],"results,":[218],"but":[219],"significantly":[220],"reduced":[221,252],"process.":[227],"Creating":[228],"unstructured":[232],"text":[233],"important":[236],"step":[237],"mechanistic":[240],"interpretation":[241],"reusability":[243],"knowledge.":[245,264],"Our":[246],"model":[277],"vascular":[279],"disease":[280],"demonstrating":[281],"usefulness":[283],"construction":[291],"mechanistically":[293],"meaningful":[294]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
