{"id":"https://openalex.org/W2136146907","doi":"https://doi.org/10.1093/database/bav050","title":"A general concept for consistent documentation of computational analyses","display_name":"A general concept for consistent documentation of computational analyses","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2136146907","doi":"https://doi.org/10.1093/database/bav050","mag":"2136146907","pmid":"https://pubmed.ncbi.nlm.nih.gov/26055099"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav050/16976075/bav050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav050/16976075/bav050.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056879660","display_name":"Peter Ebert","orcid":"https://orcid.org/0000-0001-7441-532X"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Peter Ebert","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]},{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056566361","display_name":"Fabian M\u00fcller","orcid":"https://orcid.org/0000-0001-5809-2321"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian M\u00fcller","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]},{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059297888","display_name":"Karl Nordstr\u00f6m","orcid":"https://orcid.org/0000-0001-6231-4417"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karl Nordstr\u00f6m","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]},{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023556977","display_name":"Thomas Lengauer","orcid":"https://orcid.org/0000-0003-3801-2640"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Lengauer","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]},{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080725960","display_name":"Marcel H. Schulz","orcid":"https://orcid.org/0000-0002-1252-3656"},"institutions":[{"id":"https://openalex.org/I4210109712","display_name":"Max Planck Institute for Informatics","ror":"https://ror.org/01w19ak89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210109712"]},{"id":"https://openalex.org/I91712215","display_name":"Saarland University","ror":"https://ror.org/01jdpyv68","country_code":"DE","type":"education","lineage":["https://openalex.org/I91712215"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Marcel H. Schulz","raw_affiliation_strings":["Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n          2\n          Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n          3\n          Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n          4\n          Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]},{"raw_affiliation_string":"Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarbr\u00fccken, Germany \n 2\n Graduate School of Computer Science, Saarland University, Saarbr\u00fccken, Germany \n 3\n Department of Genetics, Saarland University, Saarbr\u00fccken, Germany and \n 4\n Cluster of Excellence on Multimodal Computing and Interaction, Saarland University, Saarbr\u00fccken, Germany","institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5080725960"],"corresponding_institution_ids":["https://openalex.org/I4210109712","https://openalex.org/I91712215"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":5.201,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.95530211,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2015","issue":null,"first_page":"bav050","last_page":"bav050"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8478657007217407},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.8343545794487},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.7932254672050476},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7776819467544556},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6350277066230774},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.5922044515609741},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5628615617752075},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.532878577709198},{"id":"https://openalex.org/keywords/software-documentation","display_name":"Software documentation","score":0.4987335205078125},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46567365527153015},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43166399002075195},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4304482340812683},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.41454029083251953},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3760702610015869},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2859545946121216},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.2736460566520691},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2222651243209839},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15820887684822083},{"id":"https://openalex.org/keywords/software-development-process","display_name":"Software development process","score":0.13458752632141113},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11693704128265381}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8478657007217407},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.8343545794487},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.7932254672050476},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7776819467544556},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6350277066230774},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.5922044515609741},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5628615617752075},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.532878577709198},{"id":"https://openalex.org/C81587897","wikidata":"https://www.wikidata.org/wiki/Q181702","display_name":"Software documentation","level":5,"score":0.4987335205078125},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46567365527153015},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43166399002075195},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4304482340812683},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.41454029083251953},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3760702610015869},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2859545946121216},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.2736460566520691},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2222651243209839},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15820887684822083},{"id":"https://openalex.org/C180152950","wikidata":"https://www.wikidata.org/wiki/Q2904257","display_name":"Software development process","level":4,"score":0.13458752632141113},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11693704128265381},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D015443","descriptor_name":"Word Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bav050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav050/16976075/bav050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:3427225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4460408","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:26055099","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26055099","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.mpg.de:item_2171241","is_oa":true,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-0027-BD04-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/bav050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav050/16976075/bav050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.41999998688697815,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G4006377073","display_name":null,"funder_award_id":"01KU1216A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G5004165047","display_name":"Collaborative Research: EPIIC: The Concept CAF\u00c9 (Collaborative Activities Fostering Exploration): Innovation Brewing","funder_award_id":"2433183","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8422761607","display_name":null,"funder_award_id":"01-KU1216F","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2136146907.pdf","grobid_xml":"https://content.openalex.org/works/W2136146907.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W2000875411","https://openalex.org/W2010605118","https://openalex.org/W2013434113","https://openalex.org/W2018363492","https://openalex.org/W2075016035","https://openalex.org/W2091940856","https://openalex.org/W2096465161","https://openalex.org/W2104148262","https://openalex.org/W2106831214","https://openalex.org/W2130430745","https://openalex.org/W2130542009","https://openalex.org/W2136482257","https://openalex.org/W2146545525","https://openalex.org/W2147719979","https://openalex.org/W2149305892","https://openalex.org/W2157750191","https://openalex.org/W2158789637","https://openalex.org/W2161645441","https://openalex.org/W2168909179","https://openalex.org/W2171808845","https://openalex.org/W2259938310","https://openalex.org/W2519244818","https://openalex.org/W4230875896","https://openalex.org/W6634936471","https://openalex.org/W6635870757","https://openalex.org/W6650814209","https://openalex.org/W6653732965","https://openalex.org/W6674364653","https://openalex.org/W6675685140","https://openalex.org/W6676028024","https://openalex.org/W6679315054","https://openalex.org/W6679379246","https://openalex.org/W6680370875","https://openalex.org/W6681448040","https://openalex.org/W6681685358","https://openalex.org/W6683225169","https://openalex.org/W6683860228","https://openalex.org/W6684463743","https://openalex.org/W6684835615"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W2391444248","https://openalex.org/W2390716080"],"abstract_inverted_index":{"The":[0],"ever-growing":[1],"amount":[2],"of":[3,8,14,24,52,182,193,220,237,250],"data":[4],"in":[5,27,45,71,199,246],"the":[6,28,38,43,49,72,110,158,165,168,171,180,221,235],"field":[7],"life":[9],"sciences":[10],"demands":[11],"standardized":[12],"ways":[13],"high-throughput":[15],"computational":[16,29,79,129,140,251],"analysis.":[17],"This":[18],"standardization":[19],"requires":[20],"a":[21,116,120,134,139,143,194,247],"thorough":[22],"documentation":[23,107,184],"each":[25],"step":[26],"analysis":[30,130,141,176],"to":[31,34,42,60,77,108,156,185,217,231,243],"enable":[32],"researchers":[33,95,211],"understand":[35,109],"and":[36,48,105,112,122,127,145,212],"reproduce":[37,157],"results.":[39,159],"However,":[40],"due":[41],"heterogeneity":[44],"software":[46,102,196],"setups":[47],"high":[50],"rate":[51],"change":[53],"during":[54],"tool":[55],"development,":[56],"reproducibility":[57],"is":[58,64,67,191],"hard":[59],"achieve.":[61],"One":[62],"reason":[63],"that":[65,137,204],"there":[66],"no":[68,232],"common":[69],"agreement":[70],"research":[73,252],"community":[74],"on":[75],"how":[76],"document":[78],"studies.":[80],"In":[81,160],"many":[82],"cases,":[83],"simple":[84,121],"flat":[85],"files":[86],"or":[87],"other":[88,210],"unstructured":[89],"text":[90],"documents":[91,203],"are":[92,99],"provided":[93],"by":[94],"as":[96],"documentation,":[97],"which":[98,150],"often":[100],"missing":[101],"dependencies,":[103],"versions":[104],"sufficient":[106],"workflow":[111,236],"parameter":[113],"settings.":[114],"As":[115],"solution":[117],"we":[118,163,240],"suggest":[119],"modest":[123],"approach":[124,190,225],"for":[125],"documenting":[126],"verifying":[128],"pipelines.":[131],"We":[132],"propose":[133],"two-part":[135],"scheme":[136],"defines":[138],"using":[142],"Process":[144],"an":[146,174,186,214,238],"Analysis":[147],"metadata":[148,166,172],"document,":[149],"jointly":[151],"describe":[152],"all":[153],"necessary":[154],"details":[155],"this":[161],"design":[162],"separate":[164],"specifying":[167],"process":[169],"from":[170],"describing":[173],"actual":[175],"run,":[177],"thereby":[178],"reducing":[179],"effort":[181],"manual":[183],"absolute":[187],"minimum.":[188],"Our":[189],"independent":[192],"specific":[195],"environment,":[197],"results":[198],"human":[200],"readable":[201],"XML":[202],"can":[205],"easily":[206],"be":[207,244],"shared":[208],"with":[209,229],"allows":[213],"automated":[215],"validation":[216],"ensure":[218],"consistency":[219],"metadata.":[222],"Because":[223],"our":[224],"has":[226],"been":[227],"designed":[228],"little":[230],"assumptions":[233],"concerning":[234],"analysis,":[239],"expect":[241],"it":[242],"applicable":[245],"wide":[248],"range":[249],"fields.":[253]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}