{"id":"https://openalex.org/W2402309439","doi":"https://doi.org/10.1093/database/bav042","title":"AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs","display_name":"AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2402309439","doi":"https://doi.org/10.1093/database/bav042","mag":"2402309439","pmid":"https://pubmed.ncbi.nlm.nih.gov/25972521"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav042/7298742/bav042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav042/7298742/bav042.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102937541","display_name":"Chia-Hung Chien","orcid":"https://orcid.org/0000-0002-3844-3275"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Hung Chien","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110387577","display_name":"Yi-Fan Chiang-Hsieh","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Fan Chiang-Hsieh","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100626881","display_name":"Yi\u2010An Chen","orcid":"https://orcid.org/0009-0003-8892-1145"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-An Chen","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112369974","display_name":"Chi-Nga Chow","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chi-Nga Chow","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102172407","display_name":"Nai-Yun Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Nai-Yun Wu","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100906201","display_name":"Ping-Fu Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Ping-Fu Hou","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030196668","display_name":"Wen\u2010Chi Chang","orcid":"https://orcid.org/0000-0002-0347-1516"},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Wen-Chi Chang","raw_affiliation_strings":["College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan"],"affiliations":[{"raw_affiliation_string":"College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5030196668"],"corresponding_institution_ids":["https://openalex.org/I91807558"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":7.2396,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.96432706,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":"bav042","last_page":"bav042"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10303","display_name":"Photosynthetic Processes and Mechanisms","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9689000248908997,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis","display_name":"Arabidopsis","score":0.883942723274231},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.7510186433792114},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6413317322731018},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6027527451515198},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.46027871966362},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4570564925670624},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.43690288066864014},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.4357200264930725},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3587349057197571},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.25735747814178467}],"concepts":[{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.883942723274231},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.7510186433792114},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6413317322731018},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6027527451515198},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.46027871966362},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4570564925670624},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.43690288066864014},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.4357200264930725},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3587349057197571},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.25735747814178467},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000096","qualifier_name":"biosynthesis","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bav042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav042/7298742/bav042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25972521","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25972521","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4429749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4429749","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav042","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav042","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav042/7298742/bav042.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1660418291","display_name":null,"funder_award_id":"NSC 102-2313-B-006-004","funder_id":"https://openalex.org/F4320321040","funder_display_name":"National Science Council"}],"funders":[{"id":"https://openalex.org/F4320321040","display_name":"National Science Council","ror":"https://ror.org/02kv4zf79"},{"id":"https://openalex.org/F4320321041","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2402309439.pdf","grobid_xml":"https://content.openalex.org/works/W2402309439.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1976957023","https://openalex.org/W1980389572","https://openalex.org/W1990786575","https://openalex.org/W1994814273","https://openalex.org/W1999939420","https://openalex.org/W2005596439","https://openalex.org/W2016106370","https://openalex.org/W2017426710","https://openalex.org/W2024058212","https://openalex.org/W2025529750","https://openalex.org/W2032521883","https://openalex.org/W2036370503","https://openalex.org/W2037575202","https://openalex.org/W2051434262","https://openalex.org/W2053427298","https://openalex.org/W2078849828","https://openalex.org/W2094036688","https://openalex.org/W2102681919","https://openalex.org/W2103017472","https://openalex.org/W2106541825","https://openalex.org/W2111291916","https://openalex.org/W2124985265","https://openalex.org/W2135230723","https://openalex.org/W2140977526","https://openalex.org/W2144177541","https://openalex.org/W2149640462","https://openalex.org/W2152371417","https://openalex.org/W2154362705","https://openalex.org/W2155142785","https://openalex.org/W2160479334","https://openalex.org/W2164683872","https://openalex.org/W2165950331","https://openalex.org/W2166898290","https://openalex.org/W2168251502","https://openalex.org/W2184417913","https://openalex.org/W2722370068","https://openalex.org/W3104970623","https://openalex.org/W4211128299","https://openalex.org/W4246411173","https://openalex.org/W6644650439","https://openalex.org/W6645170178","https://openalex.org/W6647787226","https://openalex.org/W6650476511","https://openalex.org/W6651894299","https://openalex.org/W6654255345","https://openalex.org/W6654812433","https://openalex.org/W6656364407","https://openalex.org/W6656906308","https://openalex.org/W6658896249","https://openalex.org/W6659346763","https://openalex.org/W6659905977","https://openalex.org/W6663424182","https://openalex.org/W6663773575","https://openalex.org/W6670149492","https://openalex.org/W6675117395","https://openalex.org/W6676387840","https://openalex.org/W6678809345","https://openalex.org/W6680231872","https://openalex.org/W6680981203","https://openalex.org/W6681502031","https://openalex.org/W6682203191","https://openalex.org/W6682637035","https://openalex.org/W6682662929","https://openalex.org/W6682664062","https://openalex.org/W6684332900","https://openalex.org/W6785709203","https://openalex.org/W6828892449","https://openalex.org/W7073800979","https://openalex.org/W7073816746"],"related_works":["https://openalex.org/W1594012662","https://openalex.org/W2106134872","https://openalex.org/W2269421989","https://openalex.org/W3147624048","https://openalex.org/W2006745274","https://openalex.org/W2355042192","https://openalex.org/W2391996571","https://openalex.org/W2372627703","https://openalex.org/W1987749596","https://openalex.org/W2128583238"],"abstract_inverted_index":{"Compared":[0],"with":[1],"animal":[2],"microRNAs":[3],"(miRNAs),":[4],"our":[5],"limited":[6],"knowledge":[7],"of":[8,34,39,48,55,65,119,147,171,200],"how":[9],"miRNAs":[10,121,148,173,202],"involve":[11],"in":[12,16,43,71,116,194],"significant":[13],"biological":[14],"processes":[15],"plants":[17],"is":[18,22,191],"still":[19],"unclear.":[20],"AtmiRNET":[21,59,195],"a":[23],"novel":[24],"resource":[25],"geared":[26],"toward":[27],"plant":[28,201],"scientists":[29],"for":[30,107,154,211],"reconstructing":[31],"regulatory":[32,160],"networks":[33,161],"Arabidopsis":[35,72,108,120,172],"miRNAs.":[36],"By":[37],"means":[38],"highlighted":[40],"miRNA":[41,69,109,178],"studies":[42],"target":[44,49],"recognition,":[45],"functional":[46,155],"enrichment":[47,156],"genes,":[50],"promoter":[51,95],"identification":[52],"and":[53,57,68,132,149,182,203],"detection":[54],"cis-":[56],"trans-elements,":[58],"allows":[60],"users":[61,163],"to":[62,99],"explore":[63],"mechanisms":[64],"transcriptional":[66,85,117,179],"regulation":[67,118,180],"functions":[70],"thaliana,":[73],"which":[74],"are":[75,122,152],"rarely":[76],"investigated":[77],"so":[78],"far.":[79],"High-throughput":[80],"next-generation":[81],"sequencing":[82],"datasets":[83],"from":[84],"start":[86],"sites":[87],"(TSSs)-relevant":[88],"experiments":[89],"as":[90,92],"well":[91],"five":[93],"core":[94],"elements":[96],"were":[97],"collected":[98],"establish":[100],"the":[101,141,144,168,175,197],"support":[102],"vector":[103],"machine-based":[104],"prediction":[105],"model":[106],"TSSs.":[110],"Then,":[111],"high-confidence":[112],"transcription":[113],"factors":[114],"participate":[115],"provided":[123],"based":[124],"on":[125],"statistical":[126],"approach.":[127],"Furthermore,":[128],"both":[129],"experimentally":[130],"verified":[131],"putative":[133],"miRNA-target":[134],"interactions,":[135],"whose":[136],"validity":[137],"was":[138],"supported":[139],"by":[140],"correlations":[142],"between":[143,177],"expression":[145],"levels":[146],"their":[150],"targets,":[151],"elucidated":[153],"analysis.":[157],"The":[158,187],"inferred":[159],"give":[162],"an":[164],"intuitive":[165],"insight":[166],"into":[167],"pivotal":[169],"roles":[170],"through":[174],"crosstalk":[176],"(upstream)":[181],"miRNA-mediate":[183],"(downstream)":[184],"gene":[185],"circuits.":[186],"valuable":[188],"information":[189],"that":[190],"visually":[192],"oriented":[193],"recruits":[196],"scant":[198],"understanding":[199],"will":[204],"be":[205],"useful":[206],"(e.g.":[207],"ABA-miR167c-auxin":[208],"signaling":[209],"pathway)":[210],"further":[212],"research.":[213],"Database":[214],"URL:":[215],"http://AtmiRNET.itps.ncku.edu.tw/":[216]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
