{"id":"https://openalex.org/W2157734084","doi":"https://doi.org/10.1093/database/bav015","title":"Colorectal cancer drug target prediction using ontology-based inference and network analysis","display_name":"Colorectal cancer drug target prediction using ontology-based inference and network analysis","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2157734084","doi":"https://doi.org/10.1093/database/bav015","mag":"2157734084","pmid":"https://pubmed.ncbi.nlm.nih.gov/25818893"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav015/16975944/bav015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav015/16975944/bav015.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cui Tao","raw_affiliation_strings":["Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052779340","display_name":"Jingchun Sun","orcid":"https://orcid.org/0000-0002-3284-7973"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingchun Sun","raw_affiliation_strings":["Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091809743","display_name":"W. Jim Zheng","orcid":"https://orcid.org/0000-0001-7411-6047"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Jim Zheng","raw_affiliation_strings":["Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100365536","display_name":"Junjie Chen","orcid":"https://orcid.org/0000-0002-0483-303X"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junjie Chen","raw_affiliation_strings":["Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084072550","display_name":"Hua Xu","orcid":"https://orcid.org/0000-0002-5274-4672"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"funder","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Xu","raw_affiliation_strings":["Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine, School of Biomedical informatics, University of Texas Health Science Center at Houston, Houston, TX 77030, USA and 2 Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA","institution_ids":["https://openalex.org/I1343551460"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5076058129"],"corresponding_institution_ids":["https://openalex.org/I1343551460"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.2838,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.92549601,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10678","display_name":"Inflammatory mediators and NSAID effects","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6207850575447083},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5624642372131348},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.5005435943603516},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5002024173736572},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.47843673825263977},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.4422542154788971},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.4293186366558075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4208703637123108},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.41866374015808105},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4155115485191345},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.37215596437454224},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32701167464256287},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24988588690757751},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23946377635002136},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23569613695144653},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.15246757864952087},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14435794949531555},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0905626118183136}],"concepts":[{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6207850575447083},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5624642372131348},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.5005435943603516},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5002024173736572},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.47843673825263977},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.4422542154788971},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.4293186366558075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4208703637123108},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.41866374015808105},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4155115485191345},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.37215596437454224},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32701167464256287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24988588690757751},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23946377635002136},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23569613695144653},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.15246757864952087},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14435794949531555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0905626118183136},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000493","qualifier_name":"pharmacokinetics","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D009363","descriptor_name":"Neoplasm Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016503","descriptor_name":"Drug Delivery Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bav015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav015/16975944/bav015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25818893","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25818893","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3348225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4375358","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav015/16975944/bav015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7699999809265137}],"awards":[{"id":"https://openalex.org/G2428140889","display_name":null,"funder_award_id":"CPRIT","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3365584266","display_name":null,"funder_award_id":"R1307","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3861605751","display_name":null,"funder_award_id":"R1307","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G4789372118","display_name":null,"funder_award_id":"R56 LM010680","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5331542805","display_name":null,"funder_award_id":"CPRIT R1307","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"},{"id":"https://openalex.org/G660503538","display_name":null,"funder_award_id":"R01LM011829","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7435482181","display_name":null,"funder_award_id":"R01LM011829","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G808444532","display_name":null,"funder_award_id":"R01LM011829","funder_id":"https://openalex.org/F4320308129","funder_display_name":"Cancer Prevention and Research Institute of Texas"}],"funders":[{"id":"https://openalex.org/F4320308129","display_name":"Cancer Prevention and Research Institute of Texas","ror":"https://ror.org/0003xa228"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157734084.pdf","grobid_xml":"https://content.openalex.org/works/W2157734084.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W132579371","https://openalex.org/W185729446","https://openalex.org/W1544009106","https://openalex.org/W1881273775","https://openalex.org/W1906037327","https://openalex.org/W1979056373","https://openalex.org/W1983248350","https://openalex.org/W1984054151","https://openalex.org/W1992442866","https://openalex.org/W2001019353","https://openalex.org/W2006839756","https://openalex.org/W2018243063","https://openalex.org/W2019707847","https://openalex.org/W2035028458","https://openalex.org/W2040377055","https://openalex.org/W2048296798","https://openalex.org/W2050693842","https://openalex.org/W2052097009","https://openalex.org/W2052214665","https://openalex.org/W2075358173","https://openalex.org/W2089350319","https://openalex.org/W2089655089","https://openalex.org/W2100967517","https://openalex.org/W2102140136","https://openalex.org/W2112947018","https://openalex.org/W2116759194","https://openalex.org/W2118151336","https://openalex.org/W2119412782","https://openalex.org/W2123060905","https://openalex.org/W2124757426","https://openalex.org/W2127451705","https://openalex.org/W2128054164","https://openalex.org/W2133591844","https://openalex.org/W2136479434","https://openalex.org/W2137052779","https://openalex.org/W2137632714","https://openalex.org/W2146511318","https://openalex.org/W2153121902","https://openalex.org/W2155033804","https://openalex.org/W2159482845","https://openalex.org/W2208662536","https://openalex.org/W2374683108","https://openalex.org/W4237095724","https://openalex.org/W4294216483","https://openalex.org/W6677585479","https://openalex.org/W6687587607"],"related_works":["https://openalex.org/W3114988578","https://openalex.org/W4385514295","https://openalex.org/W4322489931","https://openalex.org/W2797260394","https://openalex.org/W4387572939","https://openalex.org/W2008235780","https://openalex.org/W2133776184","https://openalex.org/W4285394780","https://openalex.org/W2998254619","https://openalex.org/W2799699299"],"abstract_inverted_index":{"Identification":[0],"of":[1,19,115,153],"novel":[2,41],"drug":[3,10,33,55,97,125,133,175,191],"targets":[4,152,176],"is":[5,188],"a":[6,40,63],"critical":[7],"step":[8],"in":[9,86,112],"development.":[11],"Many":[12],"recent":[13],"studies":[14],"have":[15,165],"produced":[16],"multiple":[17],"types":[18],"data,":[20,91],"which":[21,197],"provides":[22],"an":[23,87],"opportunity":[24],"to":[25,31,52,67,167,170],"mine":[26],"the":[27,69,77,113,122,131,179],"relationships":[28,78,107],"among":[29,79,121],"them":[30],"predict":[32,53],"targets.":[34,56,98],"In":[35],"this":[36],"study,":[37],"we":[38,92],"present":[39],"integrative":[42],"approach":[43,187],"that":[44,138,185],"combines":[45],"ontology":[46,88],"reasoning":[47],"with":[48,108],"network-assisted":[49],"gene":[50],"ranking":[51],"new":[54],"We":[57,99],"utilized":[58],"colorectal":[59],"cancer":[60,203],"(CRC)":[61],"as":[62,130,173],"proof-of-concept":[64],"use":[65],"case":[66],"illustrate":[68],"approach.":[70],"Starting":[71],"from":[72],"FDA-approved":[73,154],"CRC":[74,96,109,171,195],"drugs":[75],"and":[76,84,148,160],"disease,":[80],"drug,":[81],"gene,":[82],"pathway,":[83],"SNP":[85],"representing":[89],"PharmGKB":[90],"inferred":[93],"113":[94,123],"potential":[95,124,174],"further":[100],"prioritized":[101],"these":[102],"genes":[103,111,137],"based":[104,177],"on":[105,178],"their":[106],"disease":[110],"context":[114],"human":[116],"protein-protein":[117],"interaction":[118],"networks.":[119],"Thus,":[120],"targets,":[126,134],"15":[127],"were":[128],"selected":[129],"promising":[132,189],"including":[135],"some":[136],"are":[139,150],"supported":[140],"by":[141],"previous":[142],"studies.":[143],"Among":[144],"them,":[145],"EGFR,":[146],"TOP1":[147],"VEGFA":[149],"known":[151],"drugs.":[155],"Additionally,":[156],"CCND1":[157],"(cyclin":[158],"D1),":[159],"PTGS2":[161],"(prostaglandin-endoperoxide":[162],"synthase":[163],"2)":[164],"reported":[166],"be":[168,199],"relevant":[169],"or":[172],"literature":[180],"search.":[181],"These":[182],"results":[183],"indicate":[184],"our":[186],"for":[190,194,201],"target":[192],"prediction":[193],"treatment,":[196],"might":[198],"useful":[200],"other":[202],"therapeutics.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
