{"id":"https://openalex.org/W2131178902","doi":"https://doi.org/10.1093/database/bav011","title":"RNABP COGEST: a resource for investigating functional RNAs","display_name":"RNABP COGEST: a resource for investigating functional RNAs","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2131178902","doi":"https://doi.org/10.1093/database/bav011","mag":"2131178902","pmid":"https://pubmed.ncbi.nlm.nih.gov/25776022"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav011/16975904/bav011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav011/16975904/bav011.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101661139","display_name":"Sohini Bhattacharya","orcid":"https://orcid.org/0000-0002-7019-8935"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sohini Bhattacharya","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016521358","display_name":"Shriyaa Mittal","orcid":"https://orcid.org/0000-0003-3490-1969"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shriyaa Mittal","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101738641","display_name":"Swati Panigrahi","orcid":"https://orcid.org/0000-0001-7438-4164"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Swati Panigrahi","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046203598","display_name":"Purshotam Sharma","orcid":"https://orcid.org/0000-0002-5164-9833"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Purshotam Sharma","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111933776","display_name":"S. P. Preethi","orcid":null},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Preethi S. P.","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002678550","display_name":"Rahul Paul","orcid":"https://orcid.org/0000-0002-9662-9449"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Rahul Paul","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012318444","display_name":"Sukanya Halder","orcid":null},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Sukanya Halder","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089101443","display_name":"Antarip Halder","orcid":"https://orcid.org/0000-0002-3921-5207"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Antarip Halder","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051389777","display_name":"Dhananjay Bhattacharyya","orcid":"https://orcid.org/0000-0001-9227-6490"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Dhananjay Bhattacharyya","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082173414","display_name":"Abhijit Mitra","orcid":"https://orcid.org/0000-0002-6876-4838"},"institutions":[{"id":"https://openalex.org/I16019930","display_name":"Saha Institute of Nuclear Physics","ror":"https://ror.org/0491yz035","country_code":"IN","type":"facility","lineage":["https://openalex.org/I16019930"]},{"id":"https://openalex.org/I4210097016","display_name":"International Institute of Information Technology","ror":"https://ror.org/00qryer39","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097016"]},{"id":"https://openalex.org/I65181880","display_name":"Indian Institute of Technology Hyderabad","ror":"https://ror.org/01j4v3x97","country_code":"IN","type":"education","lineage":["https://openalex.org/I65181880"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Abhijit Mitra","raw_affiliation_strings":["Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n          2\n          Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I65181880","https://openalex.org/I16019930","https://openalex.org/I4210097016"]},{"raw_affiliation_string":"Center for Computational Natural Sciences and Bioinformatics (CCNSB), International Institute of Information Technology (IIIT-H), Gachibowli, Hyderabad 500032, and \n 2\n Computational Science Division, Saha Institute of Nuclear Physics (SINP), 1/AF Bidhannagar, Kolkata 700064, India","institution_ids":["https://openalex.org/I4210097016","https://openalex.org/I16019930","https://openalex.org/I65181880"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.2049,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.78956836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6333479881286621},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5649396777153015},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4629467725753784},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.35179173946380615},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2200399935245514},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.13935551047325134}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6333479881286621},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5649396777153015},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4629467725753784},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.35179173946380615},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2200399935245514},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.13935551047325134}],"mesh":[{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bav011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav011/16975904/bav011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25776022","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25776022","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3332637","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4360618","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav011","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav011","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bav011/16975904/bav011.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5672687869","display_name":null,"funder_award_id":"BT/PR-14715/PBD/16/903/2010","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131178902.pdf","grobid_xml":"https://content.openalex.org/works/W2131178902.grobid-xml"},"referenced_works_count":113,"referenced_works":["https://openalex.org/W1964915470","https://openalex.org/W1974667766","https://openalex.org/W1977148902","https://openalex.org/W1979529753","https://openalex.org/W1982680051","https://openalex.org/W1983563212","https://openalex.org/W1992852587","https://openalex.org/W1999608841","https://openalex.org/W2003294639","https://openalex.org/W2009298790","https://openalex.org/W2010747602","https://openalex.org/W2011843710","https://openalex.org/W2014628406","https://openalex.org/W2022585975","https://openalex.org/W2023167098","https://openalex.org/W2023271753","https://openalex.org/W2025529107","https://openalex.org/W2026105684","https://openalex.org/W2030976617","https://openalex.org/W2050890227","https://openalex.org/W2051296286","https://openalex.org/W2055546727","https://openalex.org/W2060390444","https://openalex.org/W2061453852","https://openalex.org/W2062516618","https://openalex.org/W2070927764","https://openalex.org/W2078366331","https://openalex.org/W2082442609","https://openalex.org/W2087101377","https://openalex.org/W2091701613","https://openalex.org/W2093887772","https://openalex.org/W2100380699","https://openalex.org/W2102304447","https://openalex.org/W2106478835","https://openalex.org/W2107533804","https://openalex.org/W2115729502","https://openalex.org/W2115923328","https://openalex.org/W2120339119","https://openalex.org/W2121447534","https://openalex.org/W2123412671","https://openalex.org/W2127382372","https://openalex.org/W2131575287","https://openalex.org/W2133279885","https://openalex.org/W2143981217","https://openalex.org/W2145065557","https://openalex.org/W2147128567","https://openalex.org/W2150404344","https://openalex.org/W2158627784","https://openalex.org/W2162224067","https://openalex.org/W2162548786","https://openalex.org/W2166963321","https://openalex.org/W2170243611","https://openalex.org/W2172206224","https://openalex.org/W2230728100","https://openalex.org/W2284118597","https://openalex.org/W2319770548","https://openalex.org/W2327453785","https://openalex.org/W2330085074","https://openalex.org/W2334105408","https://openalex.org/W2967359918","https://openalex.org/W3022547738","https://openalex.org/W6610453268","https://openalex.org/W6641470639","https://openalex.org/W6644008623","https://openalex.org/W6644553671","https://openalex.org/W6645884765","https://openalex.org/W6646103418","https://openalex.org/W6648694388","https://openalex.org/W6650359096","https://openalex.org/W6651086329","https://openalex.org/W6652771600","https://openalex.org/W6653123347","https://openalex.org/W6653576895","https://openalex.org/W6656127239","https://openalex.org/W6656295068","https://openalex.org/W6656820429","https://openalex.org/W6663427533","https://openalex.org/W6663494211","https://openalex.org/W6664399198","https://openalex.org/W6665678093","https://openalex.org/W6665820399","https://openalex.org/W6665837558","https://openalex.org/W6668225047","https://openalex.org/W6670415263","https://openalex.org/W6671263942","https://openalex.org/W6672476782","https://openalex.org/W6673698985","https://openalex.org/W6673941202","https://openalex.org/W6675079139","https://openalex.org/W6675581508","https://openalex.org/W6676147819","https://openalex.org/W6677302416","https://openalex.org/W6677453664","https://openalex.org/W6677630958","https://openalex.org/W6678134864","https://openalex.org/W6678911721","https://openalex.org/W6679314729","https://openalex.org/W6679459745","https://openalex.org/W6681087231","https://openalex.org/W6681154272","https://openalex.org/W6681871972","https://openalex.org/W6682227341","https://openalex.org/W6683428051","https://openalex.org/W6683607816","https://openalex.org/W6683883109","https://openalex.org/W6684632515","https://openalex.org/W6684869247","https://openalex.org/W6684979277","https://openalex.org/W6689366779","https://openalex.org/W6699928711","https://openalex.org/W6702031128","https://openalex.org/W6702947649","https://openalex.org/W6766970794"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Structural":[0],"bioinformatics":[1],"of":[2,30,38,62,77,92,148],"RNA":[3,41,59,93,150],"has":[4],"evolved":[5],"mainly":[6],"in":[7,21,88,144],"response":[8],"to":[9,156,165,178,185],"the":[10,39,63,73,89,102,158,162,175],"rapidly":[11],"accumulating":[12],"evidence":[13],"that":[14],"non-(protein)-coding":[15],"RNAs":[16],"(ncRNAs)":[17],"play":[18],"critical":[19],"roles":[20,87],"gene":[22],"regulation":[23],"and":[24,28,50,95,109,116,130,135,172],"development.":[25],"The":[26,152],"structures":[27],"functions":[29],"most":[31],"ncRNAs":[32],"are":[33],"however":[34],"still":[35],"unknown.":[36],"Most":[37],"available":[40],"structural":[42],"databases":[43,64],"rely":[44],"heavily":[45],"on":[46,161],"known":[47],"3D":[48,58],"structures,":[49],"contextually":[51],"correlate":[52],"base":[53,79,141],"pairing":[54],"geometry":[55],"with":[56],"actual":[57],"structures.":[60,96,151],"None":[61],"provide":[65,82,101],"any":[66],"direct":[67],"information":[68],"about":[69],"stabilization":[70],"energies.":[71],"However,":[72],"intrinsic":[74],"interaction":[75,137],"energies":[76],"constituent":[78],"pairs":[80,142],"can":[81],"significant":[83],"insights":[84,188],"into":[85],"their":[86,106],"overall":[90],"dynamics":[91],"motifs":[94],"Quantum":[97],"mechanical":[98],"(QM)":[99],"computations":[100],"only":[103],"approach":[104],"toward":[105],"accurate":[107],"quantification":[108],"characterization.":[110],"'RNA":[111],"Base":[112],"Pair":[113],"Count,":[114],"Geometry":[115],"Stability'":[117],"(http://bioinf.iiit.ac.in/RNABPCOGEST)":[118],"brings":[119],"together":[120],"information,":[121],"extracted":[122],"from":[123],"literature":[124],"data,":[125],"regarding":[126],"occurrence":[127],"frequency,":[128],"experimental":[129],"quantum":[131],"chemically":[132],"optimized":[133],"geometries,":[134],"computed":[136],"energies,":[138],"for":[139],"non-canonical":[140],"observed":[143],"a":[145],"non-redundant":[146],"dataset":[147],"functional":[149],"database":[153],"is":[154],"designed":[155],"enable":[157,174],"QM":[159],"community,":[160],"one":[163],"hand,":[164],"identify":[166],"appropriate":[167],"biologically":[168],"relevant":[169],"model":[170],"systems":[171],"also":[173],"biology":[176],"community":[177],"easily":[179],"sift":[180],"through":[181],"diverse":[182],"computational":[183],"results":[184],"gain":[186],"theoretical":[187],"which":[189],"could":[190],"promote":[191],"hypothesis":[192],"driven":[193],"biological":[194],"research.":[195]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":6},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2025-10-10T00:00:00"}
