{"id":"https://openalex.org/W2170637386","doi":"https://doi.org/10.1093/database/bav006","title":"PathCards: multi-source consolidation of human biological pathways","display_name":"PathCards: multi-source consolidation of human biological pathways","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2170637386","doi":"https://doi.org/10.1093/database/bav006","mag":"2170637386","pmid":"https://pubmed.ncbi.nlm.nih.gov/25725062"},"language":"en","primary_location":{"id":"doi:10.1093/database/bav006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/database/bav006","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051730578","display_name":"Frida Belinky","orcid":"https://orcid.org/0000-0002-0857-0660"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Frida Belinky","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005096917","display_name":"Noam Nativ","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Noam Nativ","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004114465","display_name":"Gil Stelzer","orcid":"https://orcid.org/0000-0001-9368-4912"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Gil Stelzer","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001787364","display_name":"Shahar Zimmerman","orcid":"https://orcid.org/0009-0006-8245-1658"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Shahar Zimmerman","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091107146","display_name":"Tsippi Iny Stein","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Tsippi Iny Stein","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079317531","display_name":"Marilyn Safran","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Marilyn Safran","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059866150","display_name":"Doron Lancet","orcid":"https://orcid.org/0000-0001-5424-1393"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Doron Lancet","raw_affiliation_strings":["Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5051730578"],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":8.2845,"has_fulltext":false,"cited_by_count":301,"citation_normalized_percentile":{"value":0.98260804,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/consolidation","display_name":"Consolidation (business)","score":0.7456049919128418},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5823692679405212},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34408801794052124},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.329372763633728},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32074692845344543},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.18792343139648438}],"concepts":[{"id":"https://openalex.org/C2776014549","wikidata":"https://www.wikidata.org/wiki/Q3050847","display_name":"Consolidation (business)","level":2,"score":0.7456049919128418},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5823692679405212},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34408801794052124},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.329372763633728},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32074692845344543},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.18792343139648438},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bav006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25725062","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25725062","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3326048","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4343183","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bav006","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bav006","pdf_url":null,"source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320946","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W72712630","https://openalex.org/W1505020366","https://openalex.org/W1977870419","https://openalex.org/W1994870042","https://openalex.org/W2013469333","https://openalex.org/W2023292217","https://openalex.org/W2028133290","https://openalex.org/W2039261408","https://openalex.org/W2040676413","https://openalex.org/W2047418122","https://openalex.org/W2075602427","https://openalex.org/W2080918380","https://openalex.org/W2083623855","https://openalex.org/W2096766502","https://openalex.org/W2100899895","https://openalex.org/W2101284218","https://openalex.org/W2102899487","https://openalex.org/W2104927669","https://openalex.org/W2111862142","https://openalex.org/W2113613985","https://openalex.org/W2116759194","https://openalex.org/W2121773288","https://openalex.org/W2122914905","https://openalex.org/W2123402141","https://openalex.org/W2125318012","https://openalex.org/W2125910575","https://openalex.org/W2125984976","https://openalex.org/W2128601422","https://openalex.org/W2130410032","https://openalex.org/W2133465414","https://openalex.org/W2143969914","https://openalex.org/W2146261447","https://openalex.org/W2146980885","https://openalex.org/W2151014102","https://openalex.org/W2155330008","https://openalex.org/W2160448505","https://openalex.org/W2160540739","https://openalex.org/W2163841023","https://openalex.org/W2164298117","https://openalex.org/W2170451160","https://openalex.org/W2171437346","https://openalex.org/W2171599819","https://openalex.org/W4230770774","https://openalex.org/W4232041032","https://openalex.org/W4242404314","https://openalex.org/W6675956961"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4389734400","https://openalex.org/W2047240100","https://openalex.org/W2390279801","https://openalex.org/W3121414111","https://openalex.org/W1543536610","https://openalex.org/W4391913857","https://openalex.org/W2358668433"],"abstract_inverted_index":{"The":[0,138],"study":[1],"of":[2,11,22,45,56,80,96,107,155],"biological":[3],"pathways":[4,36,73],"is":[5],"key":[6],"to":[7,111],"a":[8,19,54,78,87,104,144,165],"large":[9],"number":[10,21],"systems":[12,168],"analyses.":[13],"However,":[14],"many":[15,28],"relevant":[16],"tools":[17],"consider":[18],"limited":[20],"pathway":[23,47,119],"sources,":[24,120],"missing":[25],"out":[26],"on":[27],"genes":[29],"and":[30,42,59,92,157],"gene-to-gene":[31,113],"connections.":[32],"Simply":[33],"pooling":[34],"several":[35],"sources":[37,76,132],"would":[38],"result":[39],"in":[40,143],"redundancy":[41,91],"the":[43,94,108,129],"lack":[44],"systematic":[46],"interrelations.":[48],"To":[49],"address":[50],"this,":[51],"we":[52,126],"exercised":[53],"combination":[55],"hierarchical":[57],"clustering":[58],"nearest":[60],"neighbor":[61],"graph":[62],"representation,":[63],"with":[64,117,164],"judiciously":[65],"selected":[66],"cutoff":[67],"values,":[68],"thereby":[69],"consolidating":[70],"3215":[71],"human":[72],"from":[74],"12":[75,131],"into":[77],"set":[79],"1073":[81],"SuperPaths.":[82],"Our":[83],"unification":[84],"algorithm":[85],"finds":[86],"balance":[88],"between":[89],"reducing":[90],"optimizing":[93],"level":[95],"pathway-related":[97],"informativeness":[98],"for":[99],"individual":[100,118],"genes.":[101,160],"We":[102],"show":[103],"substantial":[105],"enhancement":[106],"SuperPaths'":[109],"capacity":[110],"infer":[112],"relationships":[114],"when":[115],"compared":[116],"separately":[121],"or":[122],"taken":[123],"together.":[124],"Further,":[125],"demonstrate":[127],"that":[128],"chosen":[130],"entail":[133],"nearly":[134],"exhaustive":[135],"gene":[136],"coverage.":[137],"computed":[139],"SuperPaths":[140],"are":[141],"presented":[142],"new":[145],"online":[146],"database,":[147],"PathCards,":[148],"showing":[149],"each":[150],"SuperPath,":[151],"its":[152,158],"constituent":[153],"network":[154],"pathways,":[156],"contained":[159],"This":[161],"provides":[162],"researchers":[163],"rich,":[166],"searchable":[167],"analysis":[169],"resource.":[170],"Database":[171],"URL:":[172],"http://pathcards.genecards.org/":[173]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":37},{"year":2023,"cited_by_count":46},{"year":2022,"cited_by_count":33},{"year":2021,"cited_by_count":39},{"year":2020,"cited_by_count":22},{"year":2019,"cited_by_count":34},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":13},{"year":2015,"cited_by_count":9}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
