{"id":"https://openalex.org/W2123604001","doi":"https://doi.org/10.1093/database/bau130","title":"Combining computational models, semantic annotations and simulation experiments in a graph database","display_name":"Combining computational models, semantic annotations and simulation experiments in a graph database","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2123604001","doi":"https://doi.org/10.1093/database/bau130","mag":"2123604001","pmid":"https://pubmed.ncbi.nlm.nih.gov/25754863"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau130","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau130/16975867/bau130.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau130/16975867/bau130.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029731037","display_name":"Ron Henkel","orcid":"https://orcid.org/0000-0001-6211-2719"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I4210163803","display_name":"Institute for Advanced Study","ror":"https://ror.org/05fj6by70","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210163803"]}],"countries":["DE","ZA"],"is_corresponding":true,"raw_author_name":"Ron Henkel","raw_affiliation_strings":["University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa"],"affiliations":[{"raw_affiliation_string":"University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa","institution_ids":["https://openalex.org/I26092322","https://openalex.org/I4665924","https://openalex.org/I4210163803"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022724143","display_name":"Olaf Wolkenhauer","orcid":"https://orcid.org/0000-0001-6105-2937"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I4210163803","display_name":"Institute for Advanced Study","ror":"https://ror.org/05fj6by70","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210163803"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Olaf Wolkenhauer","raw_affiliation_strings":["University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa"],"affiliations":[{"raw_affiliation_string":"University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa","institution_ids":["https://openalex.org/I26092322","https://openalex.org/I4665924","https://openalex.org/I4210163803"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103188993","display_name":"Dagmar Waltemath","orcid":"https://orcid.org/0000-0002-5886-5563"},"institutions":[{"id":"https://openalex.org/I4210163803","display_name":"Institute for Advanced Study","ror":"https://ror.org/05fj6by70","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210163803"]},{"id":"https://openalex.org/I26092322","display_name":"Stellenbosch University","ror":"https://ror.org/05bk57929","country_code":"ZA","type":"education","lineage":["https://openalex.org/I26092322"]},{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Dagmar Waltemath","raw_affiliation_strings":["University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa"],"affiliations":[{"raw_affiliation_string":"University of Rostock, Department of Computer Science, Albert-Einstein-Stra\u00dfe 22, D-18059 Rostock, Germany, 2 Department of Systems Biology and Bioinformatics, University of Rostock, Ulmenstrasse 69, 18057 Rostock, Germany and 3 Stellenbosch Institute for Advanced Study (STIAS), Wallenberg Research Centre at Stellenbosch University, Stellenbosch 7600, South Africa","institution_ids":["https://openalex.org/I26092322","https://openalex.org/I4665924","https://openalex.org/I4210163803"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029731037"],"corresponding_institution_ids":["https://openalex.org/I26092322","https://openalex.org/I4210163803","https://openalex.org/I4665924"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.006,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.94456246,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8494505882263184},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.575818657875061},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5510615706443787},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5246363282203674},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.5094786286354065},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.5045195817947388},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5029825568199158},{"id":"https://openalex.org/keywords/semantic-data-model","display_name":"Semantic data model","score":0.44297415018081665},{"id":"https://openalex.org/keywords/data-model","display_name":"Data model (GIS)","score":0.42387229204177856},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41855210065841675},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.24539485573768616},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2401856780052185},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.16433003544807434},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15846869349479675},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.09939393401145935}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8494505882263184},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.575818657875061},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5510615706443787},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5246363282203674},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.5094786286354065},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.5045195817947388},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5029825568199158},{"id":"https://openalex.org/C90312973","wikidata":"https://www.wikidata.org/wiki/Q7449052","display_name":"Semantic data model","level":2,"score":0.44297415018081665},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.42387229204177856},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41855210065841675},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.24539485573768616},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2401856780052185},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.16433003544807434},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15846869349479675},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.09939393401145935},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bau130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau130","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau130/16975867/bau130.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25754863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25754863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3326407","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4352687","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bau130","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau130","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau130/16975867/bau130.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2126276518","display_name":null,"funder_award_id":"Junior Research","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2123604001.pdf","grobid_xml":"https://content.openalex.org/works/W2123604001.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W105479454","https://openalex.org/W1528124176","https://openalex.org/W1566102697","https://openalex.org/W1969709265","https://openalex.org/W1971060829","https://openalex.org/W1972510991","https://openalex.org/W1987172285","https://openalex.org/W1996195324","https://openalex.org/W2020391739","https://openalex.org/W2020561965","https://openalex.org/W2033377040","https://openalex.org/W2042880070","https://openalex.org/W2055638732","https://openalex.org/W2069157810","https://openalex.org/W2070962276","https://openalex.org/W2073061263","https://openalex.org/W2097210022","https://openalex.org/W2103017472","https://openalex.org/W2113218387","https://openalex.org/W2113310608","https://openalex.org/W2113777491","https://openalex.org/W2114124738","https://openalex.org/W2114507260","https://openalex.org/W2119565742","https://openalex.org/W2123783513","https://openalex.org/W2124419982","https://openalex.org/W2127950479","https://openalex.org/W2128501050","https://openalex.org/W2128591653","https://openalex.org/W2128763542","https://openalex.org/W2131294353","https://openalex.org/W2131660156","https://openalex.org/W2136317480","https://openalex.org/W2137079713","https://openalex.org/W2139383813","https://openalex.org/W2142659266","https://openalex.org/W2145267275","https://openalex.org/W2145435867","https://openalex.org/W2150586932","https://openalex.org/W2150908245","https://openalex.org/W2151030781","https://openalex.org/W2151690182","https://openalex.org/W2153251212","https://openalex.org/W2160751597","https://openalex.org/W2162144833","https://openalex.org/W2165428180","https://openalex.org/W2168605009","https://openalex.org/W2169161051","https://openalex.org/W2170111093","https://openalex.org/W2170122529","https://openalex.org/W2171926758","https://openalex.org/W2187364252","https://openalex.org/W2285930875","https://openalex.org/W2294792814","https://openalex.org/W2611196248","https://openalex.org/W2765199527","https://openalex.org/W2889443530","https://openalex.org/W2916475656","https://openalex.org/W2944782266","https://openalex.org/W3125940556","https://openalex.org/W4250485999","https://openalex.org/W4251023000","https://openalex.org/W6682446346"],"related_works":["https://openalex.org/W2605630948","https://openalex.org/W1990928629","https://openalex.org/W2090703297","https://openalex.org/W4283723149","https://openalex.org/W2496792076","https://openalex.org/W2887168851","https://openalex.org/W2088645260","https://openalex.org/W1562156049","https://openalex.org/W846443833","https://openalex.org/W3117744218"],"abstract_inverted_index":{"Model":[0,9],"repositories":[1,40],"such":[2,124],"as":[3,125],"the":[4,7,39,63,106,137],"BioModels":[5],"Database,":[6],"CellML":[8],"Repository":[10],"or":[11],"JWS":[12],"Online":[13],"are":[14],"frequently":[15],"accessed":[16],"to":[17,97,148],"retrieve":[18],"computational":[19,109],"models":[20,110,147,159],"of":[21,32,77,108],"biological":[22,92],"systems.":[23],"However,":[24],"their":[25],"storage":[26,50],"concepts":[27],"support":[28],"only":[29],"restricted":[30],"types":[31,76],"queries":[33],"and":[34,69,72,86,94,111,131,142,165],"not":[35],"all":[36],"data":[37,85],"inside":[38],"can":[41,160],"be":[42,149,161],"retrieved.":[43],"In":[44],"this":[45,54],"article":[46],"we":[47],"present":[48],"a":[49,59,115],"concept":[51,103],"that":[52],"meets":[53],"challenge.":[55],"It":[56],"grounds":[57],"on":[58,122],"graph":[60],"database,":[61],"reflects":[62],"models'":[64],"structure,":[65],"incorporates":[66],"semantic":[67],"annotations":[68,164],"simulation":[70],"descriptions":[71],"ultimately":[73],"connects":[74],"different":[75],"model-related":[78,84],"data.":[79],"The":[80,101],"connections":[81],"between":[82],"heterogeneous":[83],"bio-ontologies":[87],"enable":[88],"efficient":[89],"search":[90],"via":[91,163],"facts":[93],"grant":[95],"access":[96,107],"new":[98],"model":[99,116,126],"features.":[100],"introduced":[102],"notably":[104],"improves":[105],"associated":[112],"simulations":[113],"in":[114,152],"repository.":[117],"This":[118],"has":[119],"positive":[120],"effects":[121],"tasks":[123],"search,":[127],"retrieval,":[128],"ranking,":[129],"matching":[130],"filtering.":[132],"Furthermore,":[133],"our":[134],"work":[135],"for":[136],"first":[138],"time":[139],"enables":[140],"CellML-":[141],"Systems":[143],"Biology":[144],"Markup":[145],"Language-encoded":[146],"effectively":[150],"maintained":[151],"one":[153],"database.":[154],"We":[155],"show":[156],"how":[157],"these":[158],"linked":[162],"queried.":[166],"Database":[167],"URL:":[168],"https://sems.uni-rostock.de/projects/masymos/":[169]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":3}],"updated_date":"2026-03-11T14:59:36.786465","created_date":"2025-10-10T00:00:00"}
