{"id":"https://openalex.org/W2120421225","doi":"https://doi.org/10.1093/database/bau129","title":"OntoMate: a text-mining tool aiding curation at the Rat Genome Database","display_name":"OntoMate: a text-mining tool aiding curation at the Rat Genome Database","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2120421225","doi":"https://doi.org/10.1093/database/bau129","mag":"2120421225","pmid":"https://pubmed.ncbi.nlm.nih.gov/25619558"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau129/7298484/bau129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau129/7298484/bau129.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089260859","display_name":"Weisong Liu","orcid":"https://orcid.org/0000-0003-3825-5597"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weisong Liu","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037400577","display_name":"Stanley J. F. Laulederkind","orcid":"https://orcid.org/0000-0001-5356-4174"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stanley J. F. Laulederkind","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021887904","display_name":"G. Thomas Hayman","orcid":"https://orcid.org/0000-0002-9553-7227"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Thomas Hayman","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059427869","display_name":"Shur\u2010Jen Wang","orcid":"https://orcid.org/0000-0001-5256-8683"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shur-Jen Wang","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109920650","display_name":"Rajni Nigam","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rajni Nigam","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101914581","display_name":"Jennifer R. Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer R. Smith","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075386381","display_name":"Jeff De Pons","orcid":null},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff De Pons","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089133523","display_name":"Melinda R. Dwinell","orcid":"https://orcid.org/0000-0002-9528-3618"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melinda R. Dwinell","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031193159","display_name":"Mary Shimoyama","orcid":"https://orcid.org/0000-0003-1176-0796"},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]},{"id":"https://openalex.org/I204308271","display_name":"Medical College of Wisconsin","ror":"https://ror.org/00qqv6244","country_code":"US","type":"education","lineage":["https://openalex.org/I204308271"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Shimoyama","raw_affiliation_strings":["Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Human and Molecular Genetics Center, Medical College of Wisconsin, 2 Department of Quantitative Health Sciences, University of Massachusetts Medical School, 3 Department of Physiology, Medical College of Wisconsin and 4 Department of Surgery, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226-3548, USA","institution_ids":["https://openalex.org/I166722992","https://openalex.org/I204308271"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9642,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.74690545,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2015","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.688054084777832},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5179489850997925},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.47083258628845215},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.44314712285995483},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34251850843429565},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19072329998016357},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06567168235778809},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.05973470211029053}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.688054084777832},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5179489850997925},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.47083258628845215},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.44314712285995483},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34251850843429565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19072329998016357},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06567168235778809},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05973470211029053}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bau129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau129/7298484/bau129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25619558","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25619558","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3303169","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4305386","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bau129","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau129","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau129/7298484/bau129.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G4253797498","display_name":null,"funder_award_id":"HL064541","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4882042709","display_name":null,"funder_award_id":"R01 HL064541","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G508638820","display_name":null,"funder_award_id":"HL064541","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G5233786491","display_name":null,"funder_award_id":"HL64541","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G6351355492","display_name":null,"funder_award_id":"HL094271","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8046924394","display_name":null,"funder_award_id":"HL64541","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120421225.pdf","grobid_xml":"https://content.openalex.org/works/W2120421225.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W102787101","https://openalex.org/W1527781663","https://openalex.org/W1607983314","https://openalex.org/W1964670939","https://openalex.org/W2049302531","https://openalex.org/W2096525273","https://openalex.org/W2097057598","https://openalex.org/W2106288120","https://openalex.org/W2109701112","https://openalex.org/W2112227057","https://openalex.org/W2115150863","https://openalex.org/W2118582067","https://openalex.org/W2121442708","https://openalex.org/W2135200210","https://openalex.org/W2166240318","https://openalex.org/W2166817943","https://openalex.org/W2169918010","https://openalex.org/W2173213060","https://openalex.org/W4239678514","https://openalex.org/W4381594492","https://openalex.org/W6604181502"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"The":[0,54,203],"Rat":[1],"Genome":[2],"Database":[3,239],"(RGD)":[4],"is":[5,29],"the":[6,22,32,62,66,76,108,114,131,147,150,168,184,188,197,219,225],"premier":[7],"repository":[8],"of":[9,31,35,58,130,227],"rat":[10],"genomic,":[11],"genetic":[12],"and":[13,51,61,128,163,179,193,210],"physiologic":[14],"data.":[15],"Converting":[16],"data":[17,160],"from":[18],"free":[19],"text":[20],"in":[21,65,113,149,167],"scientific":[23],"literature":[24,60,98,185,191],"to":[25,78,82,92,141,159,183,200,217,235],"a":[26,90,105,164,208],"structured":[27],"format":[28],"one":[30],"main":[33],"tasks":[34],"all":[36],"model":[37],"organism":[38,126],"databases.":[39],"RGD":[40,75,87,220,230],"spends":[41],"considerable":[42],"effort":[43],"manually":[44],"curating":[45],"gene,":[46],"Quantitative":[47],"Trait":[48],"Locus":[49],"(QTL)":[50],"strain":[52],"information.":[53],"rapidly":[55],"growing":[56],"volume":[57],"biomedical":[59],"active":[63],"research":[64],"biological":[67],"natural":[68],"language":[69],"processing":[70],"(bioNLP)":[71],"community":[72],"have":[73],"given":[74],"impetus":[77],"adopt":[79],"text-mining":[80],"tools":[81],"improve":[83],"curation":[84,116,169,222,237],"efficiency.":[85],"Recently,":[86],"has":[88,195,231],"initiated":[89],"project":[91],"use":[93,226],"OntoMate,":[94],"an":[95,142],"ontology-driven,":[96],"concept-based":[97],"search":[99,111,151,192],"engine":[100,112],"developed":[101],"at":[102,135],"RGD,":[103],"as":[104],"replacement":[106],"for":[107,176,190],"PubMed":[109],"(http://www.ncbi.nlm.nih.gov/pubmed)":[110],"gene":[115,122,124,221],"workflow.":[117,238],"OntoMate":[118,171],"tags":[119],"abstracts":[120],"with":[121,146,207],"names,":[123],"mutations,":[125],"name":[127],"most":[129],"16":[132],"ontologies/vocabularies":[133],"used":[134],"RGD.":[136],"All":[137,153],"terms/":[138],"entities":[139],"tagged":[140],"abstract":[143,148],"are":[144,156],"listed":[145,154],"results.":[152],"terms":[155],"linked":[157],"both":[158],"entry":[161],"boxes":[162],"term":[165],"browser":[166],"tool.":[170],"also":[172],"provides":[173],"user-activated":[174],"filters":[175],"species,":[177],"date":[178],"other":[180],"parameters":[181],"relevant":[182],"search.":[186],"Using":[187],"system":[189,204],"import":[194],"streamlined":[196],"process":[198],"compared":[199],"using":[201],"PubMed.":[202],"was":[205],"built":[206],"scalable":[209],"open":[211],"architecture,":[212],"including":[213],"features":[214],"specifically":[215],"designed":[216],"accelerate":[218],"process.":[223],"With":[224],"bioNLP":[228],"tools,":[229],"added":[232],"more":[233],"automation":[234],"its":[236],"URL:":[240],"http://rgd.mcw.edu.":[241]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
