{"id":"https://openalex.org/W2141465955","doi":"https://doi.org/10.1093/database/bau088","title":"Closing the loop: from paper to protein annotation using supervised Gene Ontology classification","display_name":"Closing the loop: from paper to protein annotation using supervised Gene Ontology classification","publication_year":2014,"publication_date":"2014-09-04","ids":{"openalex":"https://openalex.org/W2141465955","doi":"https://doi.org/10.1093/database/bau088","mag":"2141465955","pmid":"https://pubmed.ncbi.nlm.nih.gov/25190367"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau088/8247774/bau088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau088/8247774/bau088.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"J. Gobeill","raw_affiliation_strings":["BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland Julien.gobeill@hesge.ch","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland Julien.gobeill@hesge.ch","institution_ids":[]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"E. Pasche","raw_affiliation_strings":["BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022872913","display_name":"Dina Vishnyakova","orcid":"https://orcid.org/0000-0001-9101-5993"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"D. Vishnyakova","raw_affiliation_strings":["BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"P. Ruch","raw_affiliation_strings":["BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland BiTeM group, University of Applied Sciences-HEG, Library and Information Sciences, Rte de Drize 7, 1227 Geneva, Switzerland, Division of Medical Information Sciences, University and Hospitals of Geneva, Geneva, Switzerland and SIBtex group, SIB Swiss Institute of Bioinformatics, Rue Michel-Servet 1, 1206 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091440467"],"corresponding_institution_ids":["https://openalex.org/I12708293"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.7114,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.70894151,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2014","issue":"0","first_page":"bau088","last_page":"bau088"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.025299999862909317,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.798413872718811},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6591500043869019},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.6336033344268799},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.585952877998352},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5286905169487},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4824695885181427},{"id":"https://openalex.org/keywords/naive-bayes-classifier","display_name":"Naive Bayes classifier","score":0.47942012548446655},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.46292921900749207},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4487648010253906},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.41058826446533203},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39352181553840637},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24525249004364014},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1620439887046814},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.13624322414398193}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.798413872718811},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6591500043869019},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.6336033344268799},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.585952877998352},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5286905169487},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4824695885181427},{"id":"https://openalex.org/C52001869","wikidata":"https://www.wikidata.org/wiki/Q812530","display_name":"Naive Bayes classifier","level":3,"score":0.47942012548446655},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.46292921900749207},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4487648010253906},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.41058826446533203},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39352181553840637},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24525249004364014},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1620439887046814},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.13624322414398193},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bau088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau088/8247774/bau088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25190367","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25190367","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:doc.rero.ch:20141126111807-HS","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:3125336","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4154439","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:hesso.tind.io:518","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/518","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/518","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bau088","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau088","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau088/8247774/bau088.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.49000000953674316,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320326610","display_name":"Haute \u00e9cole Sp\u00e9cialis\u00e9e de Suisse Occidentale","ror":"https://ror.org/03r5zec51"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141465955.pdf","grobid_xml":"https://content.openalex.org/works/W2141465955.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1574901103","https://openalex.org/W1583061999","https://openalex.org/W1976015112","https://openalex.org/W1987185282","https://openalex.org/W2015487728","https://openalex.org/W2056119436","https://openalex.org/W2060900933","https://openalex.org/W2091940856","https://openalex.org/W2093969396","https://openalex.org/W2094726706","https://openalex.org/W2099100406","https://openalex.org/W2105316288","https://openalex.org/W2114370860","https://openalex.org/W2115024484","https://openalex.org/W2118582067","https://openalex.org/W2121570534","https://openalex.org/W2132784310","https://openalex.org/W2137539029","https://openalex.org/W2141773193","https://openalex.org/W2144949988","https://openalex.org/W2145000359","https://openalex.org/W2148118756","https://openalex.org/W2148130205","https://openalex.org/W2150850055"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516","https://openalex.org/W2169425537"],"abstract_inverted_index":{"Gene":[0,7],"function":[1],"curation":[2,67,89,256,286],"of":[3,32,44,79,81,114],"the":[4,19,30,36,62,74,87,96,102,112,171,188,207],"literature":[5],"with":[6,29],"Ontology":[8],"(GO)":[9],"concepts":[10,47,186],"is":[11,23,249,289],"one":[12],"particularly":[13],"time-consuming":[14],"task":[15,43,100],"in":[16,131,143,152,183,206,282],"genomics,":[17],"and":[18,126,170,175,196,243,257],"help":[20],"from":[21,49,60,187],"bioinformatics":[22],"highly":[24,260],"requested":[25],"to":[26,135,201,213,226,232,251,258,265],"keep":[27],"up":[28,200],"flow":[31],"publications.":[33],"In":[34,69,94],"2004,":[35],"first":[37],"BioCreative":[38,97,227],"challenge":[39],"already":[40,127],"designed":[41,159],"a":[42,50,132,149,153,160,166,234,240,244,283],"automatic":[45,103],"GO":[46,99,104,137,145,185,262],"assignment":[48,105],"full":[51,154,245],"text.":[52,155],"At":[53],"this":[54,108,219,247,270],"time,":[55],"results":[56,77],"were":[57,230],"judged":[58],"far":[59],"reaching":[61],"performances":[63,276],"required":[64],"by":[65],"real":[66,284],"workflows.":[68],"particular,":[70],"supervised":[71,116,162],"approaches":[72],"produced":[73],"most":[75],"disappointing":[76],"because":[78],"lack":[80],"training":[82,173],"data.":[83],"Ten":[84],"years":[85],"later,":[86],"available":[88,290],"data":[90],"have":[91],"massively":[92],"grown.":[93],"2013,":[95],"IV":[98],"revisited":[101],"task.":[106],"For":[107,156,191],"issue,":[109],"we":[110,158,193,229],"investigated":[111],"power":[113],"our":[115],"classifier,":[117],"GOCat.":[118],"GOCat":[119,195,288],"computes":[120],"similarities":[121],"between":[122],"an":[123],"input":[124],"text":[125],"curated":[128],"instances":[129],"contained":[130],"knowledge":[133],"base":[134],"infer":[136],"concepts.":[138,211,263],"The":[139,179],"subtask":[140,180],"A":[141],"consisted":[142,182],"selecting":[144],"evidence":[146,253],"sentences":[147,254],"for":[148,203,237,255,279],"relevant":[150,261],"gene":[151,241],"this,":[157,192],"state-of-the-art":[161],"statistical":[163],"approach,":[164],"using":[165],"na\u00efve":[167],"Bayes":[168],"classifier":[169],"official":[172],"set,":[174],"obtained":[176],"fair":[177],"results.":[178],"B":[181],"predicting":[184],"previous":[189,214,266],"output.":[190],"applied":[194],"reached":[197],"leading":[198],"results,":[199],"65%":[202],"hierarchical":[204],"recall":[205],"top":[208],"20":[209],"outputted":[210],"Contrary":[212,264],"competitions,":[215,267],"machine":[216,268],"learning":[217,269],"has":[218],"time":[220,271],"outperformed":[221,272],"standard":[222],"dictionary-based":[223,273],"approaches.":[224],"Thanks":[225],"IV,":[228],"able":[231,250],"design":[233],"complete":[235],"workflow":[236],"curation:":[238],"given":[239],"name":[242],"text,":[246],"system":[248],"select":[252],"deliver":[259],"systems.":[274],"Observed":[275],"are":[277],"sufficient":[278],"being":[280],"used":[281],"semiautomatic":[285],"workflow.":[287],"at":[291],"http://eagl.unige.ch/GOCat/.":[292],"DATABASE":[293],"URL:":[294],"http://eagl.unige.ch/GOCat4FT/.":[295]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
