{"id":"https://openalex.org/W2119813769","doi":"https://doi.org/10.1093/database/bau087","title":"Integrating information retrieval with distant supervision for Gene Ontology annotation","display_name":"Integrating information retrieval with distant supervision for Gene Ontology annotation","publication_year":2014,"publication_date":"2014-09-01","ids":{"openalex":"https://openalex.org/W2119813769","doi":"https://doi.org/10.1093/database/bau087","mag":"2119813769","pmid":"https://pubmed.ncbi.nlm.nih.gov/25183856"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau087","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau087/8247724/bau087.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau087/8247724/bau087.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038710451","display_name":"Dexiang Zhu","orcid":"https://orcid.org/0000-0002-3168-2978"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Zhu","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013312473","display_name":"Dongmei Li","orcid":"https://orcid.org/0000-0002-7209-8524"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Li","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078123101","display_name":"Ben Carterette","orcid":"https://orcid.org/0000-0001-9538-047X"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Carterette","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100387512","display_name":"Hui Liu","orcid":"https://orcid.org/0000-0001-7158-913X"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Liu","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA liu.hongfang@mayo.edu","1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA liu.hongfang@mayo.edu","institution_ids":["https://openalex.org/I4210146710","https://openalex.org/I1330342723"]},{"raw_affiliation_string":"1Department of Health Sciences Research, Mayo Clinic, 200 First St SW, Rochester, MN 55905 and 2Department of Computer & Information Sciences, University of Delaware, 101 SMITH HALL, Newark, DE 19716, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2792,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.59911342,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"2014","issue":"0","first_page":"bau087","last_page":"bau087"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9577999711036682,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.03449999913573265,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8017807006835938},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.736022412776947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.672980785369873},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.6187088489532471},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6053329706192017},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4490193724632263},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25946781039237976},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17686396837234497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15378880500793457},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06237861514091492}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8017807006835938},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.736022412776947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.672980785369873},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.6187088489532471},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6053329706192017},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4490193724632263},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25946781039237976},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17686396837234497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15378880500793457},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06237861514091492},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bau087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau087","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau087/8247724/bau087.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25183856","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25183856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:3122723","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4150992","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bau087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau087","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau087/8247724/bau087.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2858025007","display_name":null,"funder_award_id":"R01 LM009959","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5387631503","display_name":"CAREER:  Natural Language Processing for Biological Knowledge Management","funder_award_id":"0845523","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6493265386","display_name":null,"funder_award_id":"R01LM009959","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G7999594839","display_name":null,"funder_award_id":"R01 GM102282","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119813769.pdf","grobid_xml":"https://content.openalex.org/works/W2119813769.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W22461475","https://openalex.org/W40955826","https://openalex.org/W58718941","https://openalex.org/W191029809","https://openalex.org/W1550261314","https://openalex.org/W1880262756","https://openalex.org/W1974208298","https://openalex.org/W2056119436","https://openalex.org/W2084303685","https://openalex.org/W2091978351","https://openalex.org/W2100163972","https://openalex.org/W2106490775","https://openalex.org/W2107789863","https://openalex.org/W2108665656","https://openalex.org/W2112227057","https://openalex.org/W2115150863","https://openalex.org/W2118582067","https://openalex.org/W2123157758","https://openalex.org/W2123958887","https://openalex.org/W2130325614","https://openalex.org/W2132827946","https://openalex.org/W2136922672","https://openalex.org/W2146486983","https://openalex.org/W2169353679","https://openalex.org/W2396918234"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W1533177136","https://openalex.org/W4380994516"],"abstract_inverted_index":{"This":[0],"article":[1],"describes":[2],"our":[3],"participation":[4],"of":[5,24,38,93,110,129,132,166,192],"the":[6,63,130,146,211],"Gene":[7],"Ontology":[8],"Curation":[9],"task":[10],"(GO":[11],"task)":[12],"in":[13,19,32,44,62,150],"BioCreative":[14],"IV":[15],"where":[16],"we":[17,50,89],"participated":[18],"both":[20],"subtasks:":[21],"A)":[22],"identification":[23],"GO":[25,39,100,142,153],"evidence":[26],"sentences":[27,151],"(GOESs)":[28],"for":[29,41,106,159,182,206],"relevant":[30,42],"genes":[31,43,83],"full-text":[33,45,115],"articles":[34],"and":[35,118,135,152,172,198],"B)":[36],"prediction":[37],"terms":[40,101,143],"articles.":[46],"For":[47,86],"subtask":[48,87,160,183,207],"A,":[49],"trained":[51],"a":[52,76,126,137,185],"logistic":[53],"regression":[54],"model":[55],"to":[56,81],"detect":[57],"GOES":[58],"based":[59,102,144,168,194],"on":[60,103,145,169,195],"annotations":[61,105],"training":[64],"data":[65],"supplemented":[66],"with":[67,84],"more":[68],"noisy":[69],"negatives":[70],"from":[71],"an":[72,163,189],"external":[73],"resource.":[74],"Then,":[75],"greedy":[77],"approach":[78],"was":[79],"applied":[80],"associate":[82],"sentences.":[85],"B,":[88,184],"designed":[90],"two":[91],"types":[92],"systems:":[94],"(i)":[95],"search-based":[96,186,204],"systems,":[97],"which":[98,140],"predict":[99],"existing":[104],"GOESs":[107],"that":[108],"are":[109],"different":[111],"textual":[112],"granularities":[113],"(i.e.,":[114,125],"articles,":[116],"abstracts,":[117],"sentences)":[119],"using":[120],"state-of-the-art":[121],"information":[122],"retrieval":[123],"techniques":[124],"novel":[127],"application":[128],"idea":[131],"distant":[133],"supervision)":[134],"(ii)":[136],"similarity-based":[138,212],"system,":[139,187],"assigns":[141],"distance":[147],"between":[148],"words":[149],"terms/synonyms.":[154],"Our":[155,178,203],"best":[156,179],"performing":[157,180],"system":[158,181],"A":[161],"achieves":[162,188],"F1":[164,190],"score":[165,191],"0.27":[167],"exact":[170,196],"match":[171,197],"0.387":[173],"allowing":[174],"relaxed":[175],"overlap":[176],"match.":[177],"0.075":[193],"0.301":[199],"considering":[200],"hierarchical":[201],"matches.":[202],"systems":[205],"B":[208],"significantly":[209],"outperformed":[210],"system.":[213],"DATABASE":[214],"URL:":[215],"https://github.com/noname2020/Bioc.":[216]},"counts_by_year":[{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
