{"id":"https://openalex.org/W2106279837","doi":"https://doi.org/10.1093/database/bau073","title":"tmBioC: improving interoperability of text-mining tools with BioC","display_name":"tmBioC: improving interoperability of text-mining tools with BioC","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2106279837","doi":"https://doi.org/10.1093/database/bau073","mag":"2106279837","pmid":"https://pubmed.ncbi.nlm.nih.gov/25062914"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau073/17472973/bau073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau073/17472973/bau073.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112061816","display_name":"Ritu Khare","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ritu Khare","raw_affiliation_strings":["National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058918482","display_name":"Chih-Hsuan Wei","orcid":"https://orcid.org/0000-0001-5094-7321"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chih-Hsuan Wei","raw_affiliation_strings":["National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089104211","display_name":"Yuqing Mao","orcid":"https://orcid.org/0000-0003-4573-6567"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuqing Mao","raw_affiliation_strings":["National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044947146","display_name":"Robert Leaman","orcid":"https://orcid.org/0000-0003-3296-5766"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Leaman","raw_affiliation_strings":["National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3899,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.61249106,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2014","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8339340686798096},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7695955634117126},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7077646255493164},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.5979554653167725},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5176246762275696},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.48026394844055176},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.400771826505661},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34758296608924866},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.273685485124588}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8339340686798096},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7695955634117126},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7077646255493164},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.5979554653167725},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5176246762275696},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.48026394844055176},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.400771826505661},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34758296608924866},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.273685485124588},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bau073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau073/17472973/bau073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25062914","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25062914","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4110697","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4110697","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bau073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau073","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau073/17472973/bau073.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106279837.pdf","grobid_xml":"https://content.openalex.org/works/W2106279837.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1964670939","https://openalex.org/W1983183415","https://openalex.org/W2022484638","https://openalex.org/W2050518900","https://openalex.org/W2056569219","https://openalex.org/W2056616115","https://openalex.org/W2060942759","https://openalex.org/W2061167720","https://openalex.org/W2074640468","https://openalex.org/W2096797897","https://openalex.org/W2102575587","https://openalex.org/W2104148262","https://openalex.org/W2106782755","https://openalex.org/W2107005506","https://openalex.org/W2112543617","https://openalex.org/W2119091936","https://openalex.org/W2123579157","https://openalex.org/W2125552472","https://openalex.org/W2129113459","https://openalex.org/W2132180308","https://openalex.org/W2142016317","https://openalex.org/W2142575968","https://openalex.org/W2157695030","https://openalex.org/W2163303745","https://openalex.org/W2166240318","https://openalex.org/W2169099542","https://openalex.org/W2171374484","https://openalex.org/W2186301176","https://openalex.org/W2251247982","https://openalex.org/W2263893547","https://openalex.org/W2272090139","https://openalex.org/W2467554564","https://openalex.org/W2891636418","https://openalex.org/W6675914680","https://openalex.org/W6686682713","https://openalex.org/W6691500663","https://openalex.org/W6693201831"],"related_works":["https://openalex.org/W2595172197","https://openalex.org/W2084856301","https://openalex.org/W2127970246","https://openalex.org/W2885125400","https://openalex.org/W1001352512","https://openalex.org/W1989889224","https://openalex.org/W4382618745","https://openalex.org/W1973775000","https://openalex.org/W2748922771","https://openalex.org/W2251247982"],"abstract_inverted_index":{"The":[0,215,293],"lack":[1],"of":[2,20,73,132,143,198,212,226,287],"interoperability":[3,59],"among":[4],"biomedical":[5,117],"text-mining":[6,27,103,290],"tools":[7,31,66,135,179,228,259],"is":[8,48,70,106,163,296],"a":[9,49,54,71,173,238],"major":[10],"bottleneck":[11],"in":[12,42,93,115,172,186,229,235,247,260,285],"creating":[13],"more":[14,264],"complex":[15],"applications.":[16,68],"Despite":[17],"the":[18,94,116,121,158,187,195,209,213,248,258],"availability":[19],"numerous":[21],"methods":[22],"and":[23,35,40,67,83,85,112,119,140,152,169,180,200,237,241],"techniques":[24],"for":[25,136,289],"various":[26],"tasks,":[28],"combining":[29],"different":[30,174],"requires":[32],"substantial":[33],"efforts":[34],"time":[36],"owing":[37],"to":[38,57,64,79,90,108,125,165,183,207],"heterogeneity":[39],"variety":[41],"data":[43,185],"formats.":[44],"In":[45,97],"response,":[46],"BioC":[47,69,95,124,189,196,217,282],"recent":[50],"proposal":[51],"that":[52,76,257,280],"offers":[53],"minimalistic":[55],"approach":[56],"tool":[58,162,291],"by":[60],"stipulating":[61],"minimal":[62,203],"changes":[63,204],"existing":[65],"family":[72,197],"XML":[74],"formats":[75,199],"define":[77],"how":[78],"present":[80],"text":[81],"documents":[82,92],"annotations,":[84],"also":[86],"provides":[87],"easy-to-use":[88],"functions":[89],"read/write":[91,184],"format.":[96,175,190],"this":[98],"study,":[99],"we":[100,221,254],"introduce":[101],"our":[102,227],"toolkit,":[104,219],"which":[105,220],"designed":[107,164],"perform":[109],"several":[110],"challenging":[111],"significant":[113],"tasks":[114],"domain,":[118],"repackage":[120],"toolkit":[122,130,295],"into":[123],"enhance":[126],"its":[127],"interoperability.":[128],"Our":[129,276],"consists":[131,225],"six":[133],"state-of-the-art":[134],"named-entity":[137],"recognition,":[138],"normalization":[139],"annotation":[141],"(PubTator)":[142],"genes":[144],"(GenNorm),":[145],"diseases":[146],"(DNorm),":[147],"mutations":[148],"(tmVar),":[149],"species":[150],"(SR4GN)":[151],"chemicals":[153],"(tmChem).":[154],"Although":[155],"developed":[156],"within":[157],"same":[159],"group,":[160],"each":[161,268],"process":[166],"input":[167],"articles":[168],"output":[170],"annotations":[171],"We":[176,191],"modify":[177],"these":[178],"enable":[181],"them":[182],"proposed":[188],"find":[192],"that,":[193],"using":[194,281],"functions,":[201],"only":[202],"were":[205],"required":[206],"build":[208],"newer":[210],"versions":[211],"tools.":[214],"resulting":[216],"wrapped":[218],"have":[222],"named":[223],"tmBioC,":[224],"BioC,":[230,236],"an":[231],"annotated":[232],"full-text":[233],"corpus":[234],"format":[239],"detection":[240],"conversion":[242],"tool.":[243],"Furthermore,":[244],"through":[245],"participation":[246],"2013":[249],"BioCreative":[250],"IV":[251],"Interoperability":[252],"Track,":[253],"empirically":[255],"demonstrate":[256],"tmBioC":[261,294],"can":[262],"be":[263],"efficiently":[265],"integrated":[266],"with":[267,273],"other":[269],"as":[270,272],"well":[271],"external":[274],"tools:":[275],"experimental":[277],"results":[278],"show":[279],"reduces":[283],">60%":[284],"lines":[286],"code":[288],"integration.":[292],"publicly":[297],"available":[298],"at":[299],"http://www.ncbi.nlm.nih.gov/CBBresearch/Lu/Demo/tmTools/.":[300,303],"Database":[301],"URL:":[302]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
