{"id":"https://openalex.org/W2105939244","doi":"https://doi.org/10.1093/database/bau064","title":"Processing biological literature with customizable Web services supporting interoperable formats","display_name":"Processing biological literature with customizable Web services supporting interoperable formats","publication_year":2014,"publication_date":"2014-07-08","ids":{"openalex":"https://openalex.org/W2105939244","doi":"https://doi.org/10.1093/database/bau064","mag":"2105939244","pmid":"https://pubmed.ncbi.nlm.nih.gov/25006225"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau064/8246577/bau064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau064/8246577/bau064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071577126","display_name":"Rafa\u0142 Rak","orcid":"https://orcid.org/0000-0001-9780-4205"},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"R. Rak","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101 rafal.rak@manchester.ac.uk","National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101 rafal.rak@manchester.ac.uk","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050960711","display_name":"Riza Batista-Navarro","orcid":"https://orcid.org/0000-0001-6693-7531"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["GB","PH"],"is_corresponding":false,"raw_author_name":"R. T. Batista-Navarro","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","University of Manchester, Manchester, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"University of Manchester, Manchester, United Kingdom","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103036225","display_name":"Jeremy Carter","orcid":"https://orcid.org/0000-0003-1640-3747"},"institutions":[{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"J. Carter","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I87074743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073439408","display_name":"A. Rowley","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["GB","PH"],"is_corresponding":false,"raw_author_name":"A. Rowley","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","1National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and 2Department of Computer Science, University of the Philippines Diliman, Philippines 1101"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"1National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and 2Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["GB","PH"],"is_corresponding":false,"raw_author_name":"S. Ananiadou","raw_affiliation_strings":["National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","1National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and 2Department of Computer Science, University of the Philippines Diliman, Philippines 1101"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"1National Centre for Text Mining, School of Computer Science, University of Manchester, M1 7DN, UK and 2Department of Computer Science, University of the Philippines Diliman, Philippines 1101","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071577126"],"corresponding_institution_ids":["https://openalex.org/I87074743"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1172,"currency":"EUR","value_usd":1264},"fwci":1.4297,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.81153922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2014","issue":"0","first_page":"bau064","last_page":"bau064"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8270514607429504},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.7108747363090515},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.6318585276603699},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5958108901977539},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5735708475112915},{"id":"https://openalex.org/keywords/personalization","display_name":"Personalization","score":0.5492479801177979},{"id":"https://openalex.org/keywords/web-standards","display_name":"Web standards","score":0.4529437720775604},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.44987431168556213},{"id":"https://openalex.org/keywords/web-modeling","display_name":"Web modeling","score":0.4147375226020813},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3075842559337616}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8270514607429504},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.7108747363090515},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.6318585276603699},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5958108901977539},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5735708475112915},{"id":"https://openalex.org/C183003079","wikidata":"https://www.wikidata.org/wiki/Q1000371","display_name":"Personalization","level":2,"score":0.5492479801177979},{"id":"https://openalex.org/C182321512","wikidata":"https://www.wikidata.org/wiki/Q1153289","display_name":"Web standards","level":3,"score":0.4529437720775604},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.44987431168556213},{"id":"https://openalex.org/C130436687","wikidata":"https://www.wikidata.org/wiki/Q7978591","display_name":"Web modeling","level":3,"score":0.4147375226020813},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3075842559337616},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bau064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau064/8246577/bau064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:25006225","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25006225","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/78c3a693-1709-4974-9147-7cb82058d8d5","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/78c3a693-1709-4974-9147-7cb82058d8d5","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rak, R, Batista-Navarro, R T, Carter, J, Rowley, A & Ananiadou, S 2014, 'Processing Biological Literature with Customizable Web Services Supporting Interoperable Formats', Database, vol. 2014. https://doi.org/10.1093/database/bau064","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3060883","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086403","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/78c3a693-1709-4974-9147-7cb82058d8d5","is_oa":true,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/processing-biological-literature-with-customizable-web-services-supporting-interoperable-formats(78c3a693-1709-4974-9147-7cb82058d8d5).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Rak, R, Batista-Navarro, R T, Carter, J, Rowley, A & Ananiadou, S 2014, 'Processing Biological Literature with Customizable Web Services Supporting Interoperable Formats', Database, vol. 2014. https://doi.org/10.1093/database/bau064","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/database/bau064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau064/8246577/bau064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G2812211522","display_name":"Mining the History of Medicine","funder_award_id":"AH/L00982X/1","funder_id":"https://openalex.org/F4320334609","funder_display_name":"Arts and Humanities Research Council"},{"id":"https://openalex.org/G4793955247","display_name":null,"funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6249904315","display_name":null,"funder_award_id":"AH/L00982X/1","funder_id":"https://openalex.org/F4320334609","funder_display_name":"Arts and Humanities Research Council"},{"id":"https://openalex.org/G64586531","display_name":"From text to pathways: text mining techniques for reconstructing signalling pathways","funder_award_id":"BB/G53025X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334609","display_name":"Arts and Humanities Research Council","ror":"https://ror.org/0505m1554"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W4508078","https://openalex.org/W96102373","https://openalex.org/W192665053","https://openalex.org/W1507966830","https://openalex.org/W1535549990","https://openalex.org/W1601495365","https://openalex.org/W1965893653","https://openalex.org/W1970989375","https://openalex.org/W1981215030","https://openalex.org/W1997306212","https://openalex.org/W2032729847","https://openalex.org/W2033786605","https://openalex.org/W2040298461","https://openalex.org/W2040298842","https://openalex.org/W2047017978","https://openalex.org/W2047632644","https://openalex.org/W2051547811","https://openalex.org/W2054558802","https://openalex.org/W2064940205","https://openalex.org/W2085678516","https://openalex.org/W2092489937","https://openalex.org/W2096797897","https://openalex.org/W2099701465","https://openalex.org/W2103147879","https://openalex.org/W2104148262","https://openalex.org/W2107580398","https://openalex.org/W2108345035","https://openalex.org/W2110408238","https://openalex.org/W2119412782","https://openalex.org/W2121244856","https://openalex.org/W2121652122","https://openalex.org/W2124772738","https://openalex.org/W2137052779","https://openalex.org/W2140611297","https://openalex.org/W2142741334","https://openalex.org/W2146089916","https://openalex.org/W2147880316","https://openalex.org/W2154142897","https://openalex.org/W2159092541","https://openalex.org/W2159583324","https://openalex.org/W2160943260","https://openalex.org/W2165671627","https://openalex.org/W2169099542","https://openalex.org/W2172143128","https://openalex.org/W2250552178","https://openalex.org/W2251230026","https://openalex.org/W2251431888","https://openalex.org/W2537627201","https://openalex.org/W2586226478","https://openalex.org/W2605068739","https://openalex.org/W2751508857","https://openalex.org/W2805622596"],"related_works":["https://openalex.org/W2064213895","https://openalex.org/W2083496135","https://openalex.org/W3139770152","https://openalex.org/W3136060338","https://openalex.org/W1492751213","https://openalex.org/W2989862745","https://openalex.org/W2128360161","https://openalex.org/W640668010","https://openalex.org/W2139596909","https://openalex.org/W3147180876"],"abstract_inverted_index":{"Web":[0,36,80,103,118,185],"services":[1,81,104,134,186],"have":[2],"become":[3],"a":[4,12,28,107,114,126,139],"popular":[5],"means":[6],"of":[7,14,35,78,94,117,128,141,152,160,170,177,200],"interconnecting":[8],"solutions":[9],"for":[10,27,187],"processing":[11,123],"body":[13],"scientific":[15],"literature.":[16],"This":[17],"has":[18],"fuelled":[19],"research":[20],"on":[21,43],"high-level":[22],"data":[23,145],"exchange":[24],"formats":[25,74,154],"suitable":[26],"given":[29],"domain":[30,46],"and":[31,47,55,60,63,97,101,131,137,143],"ensuring":[32],"the":[33,44,73,76,153,174,178,195],"interoperability":[34,50],"services.":[37],"In":[38],"this":[39],"article,":[40],"we":[41],"focus":[42],"biological":[45],"consider":[48],"four":[49],"formats,":[51],"BioC,":[52],"BioNLP,":[53],"XMI":[54],"RDF,":[56],"that":[57,89],"represent":[58],"domain-specific":[59],"generic":[61],"representations":[62],"include":[64],"well-established":[65],"as":[66,68,155,157,168],"well":[67,156],"emerging":[69],"specifications.":[70],"We":[71,112,148],"use":[72],"in":[75,83,173,191],"context":[77],"customizable":[79],"created":[82],"our":[84,171],"Web-based,":[85],"text-mining":[86],"workbench":[87],"Argo":[88],"features":[90],"an":[91],"ever-growing":[92],"library":[93],"elementary":[95],"analytics":[96,182],"capabilities":[98],"to":[99,135],"build":[100],"deploy":[102],"straight":[105],"from":[106,125],"convenient":[108],"graphical":[109],"user":[110],"interface.":[111],"demonstrate":[113],"2-fold":[115],"customization":[116],"services:":[119],"by":[120,132],"building":[121],"task-specific":[122],"pipelines":[124],"repository":[127],"available":[129],"analytics,":[130],"configuring":[133],"accept":[136],"produce":[138],"combination":[140],"input":[142],"output":[144],"interchange":[146],"formats.":[147],"provide":[149],"qualitative":[150],"evaluation":[151,159],"quantitative":[158],"automatic":[161],"analytics.":[162],"The":[163],"latter":[164],"was":[165],"carried":[166],"out":[167,199],"part":[169],"participation":[172],"fourth":[175],"edition":[176],"BioCreative":[179],"challenge.":[180],"Our":[181],"built":[183],"into":[184],"recognizing":[188],"biochemical":[189],"concepts":[190],"BioC":[192],"collections":[193],"achieved":[194],"highest":[196],"combined":[197],"scores":[198],"10":[201],"participating":[202],"teams.":[203],"Database":[204],"URL:":[205],"http://argo.nactem.ac.uk.":[206]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
