{"id":"https://openalex.org/W2098068971","doi":"https://doi.org/10.1093/database/bau059","title":"BioC implementations in Go, Perl, Python and Ruby","display_name":"BioC implementations in Go, Perl, Python and Ruby","publication_year":2014,"publication_date":"2014-06-23","ids":{"openalex":"https://openalex.org/W2098068971","doi":"https://doi.org/10.1093/database/bau059","mag":"2098068971","pmid":"https://pubmed.ncbi.nlm.nih.gov/24961236"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau059/8246401/bau059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau059/8246401/bau059.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100776230","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0003-1706-1208"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"W. Liu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":null,"display_name":"R. Islamaj Do\u00a0an","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Islamaj Do\u00a0an","raw_affiliation_strings":["National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037593731","display_name":"Deukwoo Kwon","orcid":"https://orcid.org/0000-0001-5376-5320"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Kwon","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089307447","display_name":"Hugo P. Marques","orcid":"https://orcid.org/0000-0003-3540-0488"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H. Marques","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025307528","display_name":"Fabio Rinaldi","orcid":"https://orcid.org/0000-0001-5718-5462"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"F. Rinaldi","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111895206","display_name":"W. John Wilbur","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. J. Wilbur","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111968060","display_name":"D. C. Comeau","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. C. Comeau","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland comeau@ncbi.nlm.nih.gov","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 8600 Rockville Pike, Bethesda, MD 20894, USA, Department of Computer Engineering, Myongji University, Yongin, Republic of Korea and Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland comeau@ncbi.nlm.nih.gov","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100776230"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.5705,"has_fulltext":true,"cited_by_count":13,"citation_normalized_percentile":{"value":0.6767715,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2014","issue":"0","first_page":"bau059","last_page":"bau059"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9379000067710876,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9257000088691711,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9219117164611816},{"id":"https://openalex.org/keywords/perl","display_name":"Perl","score":0.9206567406654358},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.854910671710968},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.6638771295547485},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6024903655052185},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4713693857192993},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4631836414337158},{"id":"https://openalex.org/keywords/unicode","display_name":"Unicode","score":0.43629106879234314},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4183921813964844},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3546043634414673},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3309127986431122}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9219117164611816},{"id":"https://openalex.org/C2777002779","wikidata":"https://www.wikidata.org/wiki/Q42478","display_name":"Perl","level":2,"score":0.9206567406654358},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.854910671710968},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.6638771295547485},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6024903655052185},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4713693857192993},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4631836414337158},{"id":"https://openalex.org/C500551929","wikidata":"https://www.wikidata.org/wiki/Q8819","display_name":"Unicode","level":2,"score":0.43629106879234314},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4183921813964844},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3546043634414673},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3309127986431122}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bau059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau059/8246401/bau059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:24961236","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24961236","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:107014","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Liu, Wanli; Do\u011fan, Rezarta Islamaj; Kwon, Dongseop; Marques, Hernani; Rinaldi, Fabio; Wilbur, W John; Comeau, Donald C  (2014). BioC Implementations in Go, Perl, Python and Ruby.  Database, 2014:bau059.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4067548","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4067548","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.5167/uzh-107014","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-107014","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/database/bau059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau059/8246401/bau059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7300000190734863,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1565274940","display_name":"Estimation des d\u00e9bits d'\u00e9tiage sur des cours d'eau sans mesures directes","funder_award_id":"10531","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2485600896","display_name":"Detection of biological interactions from biomedical literature","funder_award_id":"118396","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G250864464","display_name":"Intelligent computational control for complex structures","funder_award_id":"105315","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3404998010","display_name":"Haute tension, contraintes di\u00e9lectriques sur l'isolement de transformateurs de puissance \u00e0 tr\u00e8s haute tension.","funder_award_id":"20443","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4161420400","display_name":null,"funder_award_id":"100014","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G533832786","display_name":"Semi-automated semantic enrichment of biomedical literature","funder_award_id":"130558","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6703419042","display_name":null,"funder_award_id":"100014-118396/1","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320323874","display_name":"Universit\u00e4t Z\u00fcrich","ror":"https://ror.org/02crff812"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098068971.pdf","grobid_xml":"https://content.openalex.org/works/W2098068971.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2024940313","https://openalex.org/W2104148262","https://openalex.org/W2104483961","https://openalex.org/W2114850508","https://openalex.org/W2128567635","https://openalex.org/W2150934173","https://openalex.org/W2152966407"],"related_works":["https://openalex.org/W2475137094","https://openalex.org/W2331989206","https://openalex.org/W2008612003","https://openalex.org/W3173828731","https://openalex.org/W66419302","https://openalex.org/W45658120","https://openalex.org/W3023169329","https://openalex.org/W4389470870","https://openalex.org/W1969629924","https://openalex.org/W2782165897"],"abstract_inverted_index":{"As":[0],"part":[1],"of":[2,25,34,65,128],"a":[3,28,40],"communitywide":[4],"effort":[5],"for":[6,47,50,67,93],"evaluating":[7],"text":[8,35,72,134],"mining":[9,36,135],"and":[10,60,69,74,83,95,103,111],"information":[11],"extraction":[12],"systems":[13],"applied":[14],"to":[15,31,79,88],"the":[16,23,90,104,118,143],"biomedical":[17,51],"domain,":[18],"BioC":[19,38,62,71,78,113,122,137,144],"is":[20,39,114],"focused":[21],"on":[22],"goal":[24],"interoperability,":[26],"currently":[27],"major":[29],"barrier":[30],"wide-scale":[32],"adoption":[33],"tools.":[37],"simple":[41],"XML":[42],"format,":[43],"specified":[44],"by":[45],"DTD,":[46],"exchanging":[48],"data":[49,109],"natural":[52],"language":[53,120],"processing.":[54],"With":[55],"initial":[56],"implementations":[57,138],"in":[58,117,126],"C++":[59,91],"Java,":[61],"provides":[63],"libraries":[64],"code":[66],"reading":[68],"writing":[70],"documents":[73],"annotations.":[75],"We":[76,85],"extend":[77,89],"Perl,":[80],"Python,":[81],"Go":[82],"Ruby.":[84],"used":[86],"SWIG":[87],"implementation":[92,102,106],"Perl":[94],"one":[96],"Python":[97,101],"implementation.":[98],"A":[99],"second":[100],"Ruby":[105],"use":[107],"native":[108],"structures":[110],"libraries.":[112],"also":[115],"implemented":[116],"Google":[119],"Go.":[121],"modules":[123],"are":[124,139],"functional":[125],"all":[127],"these":[129],"languages,":[130],"which":[131],"can":[132],"facilitate":[133],"tasks.":[136],"freely":[140],"available":[141],"through":[142],"site:":[145],"http://bioc.sourceforge.net.":[146],"Database":[147],"URL:":[148],"http://bioc.sourceforge.net/":[149]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
