{"id":"https://openalex.org/W1989162387","doi":"https://doi.org/10.1093/database/bau031","title":"HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology","display_name":"HPVdb: a data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology","publication_year":2014,"publication_date":"2014-04-04","ids":{"openalex":"https://openalex.org/W1989162387","doi":"https://doi.org/10.1093/database/bau031","mag":"1989162387","pmid":"https://pubmed.ncbi.nlm.nih.gov/24705205"},"language":"en","primary_location":{"id":"doi:10.1093/database/bau031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau031","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau031/8245328/bau031.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau031/8245328/bau031.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081941611","display_name":"G. L. Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4210117453","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210117453"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"G. L. Zhang","raw_affiliation_strings":["Cancer Vaccine Center, Dana-Farber Cancer Institute, 77 Ave Louis Pasteur, Boston, MA 02115, USA, Department of Computer Science, Metropolitan College, Boston University, 808 Commonwealth Ave, Boston, MA 02215, USA, Department of Medicine, Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA and German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany","German Cancer Research Center, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Vaccine Center, Dana-Farber Cancer Institute, 77 Ave Louis Pasteur, Boston, MA 02115, USA, Department of Computer Science, Metropolitan College, Boston University, 808 Commonwealth Ave, Boston, MA 02215, USA, Department of Medicine, Harvard Medical School, 25 Shattuck Street, Boston, MA 02115, USA and German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I4210117453","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091490797","display_name":"Angelika B. Riemer","orcid":"https://orcid.org/0000-0002-5865-0714"},"institutions":[{"id":"https://openalex.org/I4210108440","display_name":"Biology of Infection","ror":"https://ror.org/01x3ftb23","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I157536573","https://openalex.org/I4210098000","https://openalex.org/I4210108440"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"A. B. Riemer","raw_affiliation_strings":["Infection and Cancer"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Infection and Cancer","institution_ids":["https://openalex.org/I4210108440"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000801624","display_name":"Derin B. Keskin","orcid":"https://orcid.org/0000-0002-8496-6181"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. B. Keskin","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090707605","display_name":"Lou Chitkushev","orcid":"https://orcid.org/0000-0002-9365-8818"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L. Chitkushev","raw_affiliation_strings":["Boston University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston University","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013709830","display_name":"Ellis L. Reinherz","orcid":"https://orcid.org/0000-0003-1048-5526"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. L. Reinherz","raw_affiliation_strings":["Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089063979","display_name":"Vladimir Brusi\u0107","orcid":"https://orcid.org/0000-0003-0523-5266"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"V. Brusic","raw_affiliation_strings":["Boston University","Harvard University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston University","institution_ids":[]},{"raw_affiliation_string":"Harvard University","institution_ids":["https://openalex.org/I2801851002"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.558,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.88671335,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2014","issue":"0","first_page":"bau031","last_page":"bau031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10146","display_name":"Cervical Cancer and HPV Research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.7242252230644226},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.59156334400177},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5835614800453186},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.5391576290130615},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5315536856651306},{"id":"https://openalex.org/keywords/human-papillomavirus","display_name":"Human papillomavirus","score":0.52006596326828},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.463672399520874},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27804961800575256},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2336602509021759},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14482101798057556},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12467369437217712},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08703848719596863}],"concepts":[{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.7242252230644226},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.59156334400177},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5835614800453186},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.5391576290130615},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5315536856651306},{"id":"https://openalex.org/C2994532551","wikidata":"https://www.wikidata.org/wiki/Q184627","display_name":"Human papillomavirus","level":2,"score":0.52006596326828},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.463672399520874},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27804961800575256},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2336602509021759},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14482101798057556},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12467369437217712},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08703848719596863},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000956","descriptor_name":"Antigens, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000956","descriptor_name":"Antigens, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000956","descriptor_name":"Antigens, Viral","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013601","descriptor_name":"T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014611","descriptor_name":"Vaccination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017124","descriptor_name":"Conserved Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018984","descriptor_name":"Epitopes, T-Lymphocyte","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D027383","descriptor_name":"Papillomaviridae","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053918","descriptor_name":"Papillomavirus Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D053918","descriptor_name":"Papillomavirus Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D053918","descriptor_name":"Papillomavirus Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bau031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau031","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau031/8245328/bau031.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:24705205","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24705205","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:dash.harvard.edu:1/12153041","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:12153041","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2959746","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3975992","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open.bu.edu:2144/24321","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pubmed/24705205","pdf_url":null,"source":{"id":"https://openalex.org/S4306402183","display_name":"OpenBU/Boston University Institutional Repository (Boston University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I111088046","host_organization_name":"Boston University","host_organization_lineage":["https://openalex.org/I111088046"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/database/bau031","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bau031","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bau031/8245328/bau031.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5807593619","display_name":null,"funder_award_id":"U01 AI090043","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"}],"funders":[{"id":"https://openalex.org/F4320310151","display_name":"Dana-Farber Cancer Institute","ror":"https://ror.org/02jzgtq86"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W1989162387.pdf"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1934180483","https://openalex.org/W1967972465","https://openalex.org/W1987350137","https://openalex.org/W1993772622","https://openalex.org/W1995875735","https://openalex.org/W2010472402","https://openalex.org/W2021427213","https://openalex.org/W2022234493","https://openalex.org/W2028339001","https://openalex.org/W2028933284","https://openalex.org/W2047368772","https://openalex.org/W2049997077","https://openalex.org/W2053843590","https://openalex.org/W2055043387","https://openalex.org/W2058244483","https://openalex.org/W2062740655","https://openalex.org/W2068900157","https://openalex.org/W2068967380","https://openalex.org/W2071848600","https://openalex.org/W2094296437","https://openalex.org/W2096866753","https://openalex.org/W2098765233","https://openalex.org/W2110575808","https://openalex.org/W2127774996","https://openalex.org/W2129612249","https://openalex.org/W2134770844","https://openalex.org/W2139736159","https://openalex.org/W2143158562","https://openalex.org/W2147427058","https://openalex.org/W2162281920","https://openalex.org/W2164710273","https://openalex.org/W2168688111","https://openalex.org/W2170785298","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W2001648299","https://openalex.org/W2037082443","https://openalex.org/W2060246599","https://openalex.org/W2001280522","https://openalex.org/W4313355581","https://openalex.org/W1824017900","https://openalex.org/W3045952742","https://openalex.org/W1997512836","https://openalex.org/W2461634416","https://openalex.org/W2061096391"],"abstract_inverted_index":{"High-risk":[0],"human":[1,166],"papillomaviruses":[2],"(HPVs)":[3],"are":[4,279],"the":[5,35,60,93,116,124,183,263],"causes":[6],"of":[7,24,34,57,63,77,97,105,115,138,145,151,175,196,218,234,237,325],"many":[8],"cancers,":[9,26],"including":[10],"cervical,":[11],"anal,":[12],"vulvar,":[13],"vaginal,":[14],"penile":[15],"and":[16,22,45,53,79,83,95,148,163,180,188,199,213,255,268,296,309,328],"oropharyngeal.":[17],"To":[18,74,311],"facilitate":[19,303],"diagnosis,":[20],"prognosis":[21],"characterization":[23],"these":[25],"it":[27],"is":[28,288,316],"necessary":[29],"to":[30,91,205,302],"make":[31],"full":[32],"use":[33],"immunological":[36,64,99],"data":[37,48,65,67,78,194,202,295,304,319],"on":[38,241],"HPV":[39,147,176,238,307,326],"available":[40],"through":[41],"publications,":[42],"technical":[43],"reports":[44],"databases.":[46,200],"These":[47],"vary":[49],"in":[50,81,281],"granularity,":[51],"quality":[52,207],"complexity.":[54],"The":[55,102,154,201],"extraction":[56],"knowledge":[58,80,100],"from":[59,142,182,193],"vast":[61],"amount":[62],"using":[66,229],"mining":[68,195,305],"techniques":[69],"remains":[70],"a":[71,87,112,289,317,322],"challenging":[72],"task.":[73],"support":[75],"integration":[76],"virology":[82],"vaccinology,":[84],"we":[85,122],"developed":[86],"framework":[88,103],"called":[89],"KB-builder":[90],"streamline":[92],"development":[94],"deployment":[96],"web-accessible":[98],"systems.":[101],"consists":[104],"seven":[106],"major":[107],"functional":[108],"modules,":[109],"each":[110],"facilitating":[111],"specific":[113],"aspect":[114],"knowledgebase":[117],"construction":[118],"process.":[119],"Using":[120],"KB-builder,":[121],"constructed":[123],"Human":[125],"Papillomavirus":[126],"T":[127,160,185,244,249],"cell":[128,161,186,245,250],"Antigen":[129],"Database":[130,330],"(HPVdb).":[131],"It":[132],"contains":[133],"2781":[134],"curated":[135,294],"antigen":[136,168],"entries":[137],"antigenic":[139],"proteins":[140],"derived":[141],"18":[143,149],"genotypes":[144,150],"high-risk":[146],"low-risk":[152],"HPV.":[153],"HPVdb":[155,287,315],"also":[156],"catalogs":[157],"191":[158],"verified":[159,165],"epitopes":[162,187],"45":[164],"leukocyte":[167],"(HLA)":[169],"ligands.":[170],"Primary":[171],"amino":[172],"acid":[173],"sequences":[174],"antigens":[177,327],"were":[178,191,203],"collected":[179,192],"annotated":[181],"UniProtKB.":[184],"HLA":[189,271,277],"ligands":[190],"scientific":[197],"literature":[198],"subject":[204],"extensive":[206],"control":[208],"(redundancy":[209],"elimination,":[210],"error":[211],"detection":[212],"vocabulary":[214],"consolidation).":[215],"A":[216],"set":[217],"computational":[219],"tools":[220,301],"for":[221,274,306],"an":[222],"in-depth":[223],"analysis,":[224,258],"such":[225],"as":[226,284],"sequence":[227,256],"comparison":[228],"BLAST":[230],"search,":[231],"multiple":[232],"alignments":[233],"antigens,":[235],"classification":[236],"types":[239],"based":[240],"cancer":[242],"risk,":[243],"epitope/HLA":[246,251],"ligand":[247,252],"visualization,":[248],"conservation":[253],"analysis":[254,300],"variability":[257],"has":[259],"been":[260],"integrated":[261],"within":[262],"HPVdb.":[264],"Predicted":[265],"Class":[266,269],"I":[267],"II":[270],"binding":[272],"peptides":[273],"15":[275],"common":[276],"alleles":[278],"included":[280],"this":[282],"database":[283],"putative":[285],"targets.":[286],"knowledge-based":[290],"system":[291],"that":[292],"integrates":[293],"information":[297],"with":[298],"tailored":[299],"vaccinology":[308],"immunology.":[310],"our":[312],"best":[313],"knowledge,":[314],"unique":[318],"source":[320],"providing":[321],"comprehensive":[323],"list":[324],"peptides.":[329],"URL:":[331],"http://cvc.dfci.harvard.edu/hpv/.":[332]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
