{"id":"https://openalex.org/W2142172193","doi":"https://doi.org/10.1093/database/bat081","title":"RefPrimeCouch\u2014a reference gene primer CouchApp","display_name":"RefPrimeCouch\u2014a reference gene primer CouchApp","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2142172193","doi":"https://doi.org/10.1093/database/bat081","mag":"2142172193","pmid":"https://pubmed.ncbi.nlm.nih.gov/24368831"},"language":"ca","primary_location":{"id":"doi:10.1093/database/bat081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat081/11198035/bat081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat081/11198035/bat081.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073362874","display_name":"Jascha Silbermann","orcid":null},"institutions":[{"id":"https://openalex.org/I38517508","display_name":"Technical University of Applied Sciences Wildau","ror":"https://ror.org/00k62pe27","country_code":"DE","type":"education","lineage":["https://openalex.org/I38517508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jascha Silbermann","raw_affiliation_strings":["Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany","institution_ids":["https://openalex.org/I38517508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019720605","display_name":"Catrin Wernicke","orcid":null},"institutions":[{"id":"https://openalex.org/I38517508","display_name":"Technical University of Applied Sciences Wildau","ror":"https://ror.org/00k62pe27","country_code":"DE","type":"education","lineage":["https://openalex.org/I38517508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Catrin Wernicke","raw_affiliation_strings":["Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany","institution_ids":["https://openalex.org/I38517508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044894045","display_name":"Heike Pospisil","orcid":"https://orcid.org/0000-0002-2561-9665"},"institutions":[{"id":"https://openalex.org/I38517508","display_name":"Technical University of Applied Sciences Wildau","ror":"https://ror.org/00k62pe27","country_code":"DE","type":"education","lineage":["https://openalex.org/I38517508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heike Pospisil","raw_affiliation_strings":["Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany","institution_ids":["https://openalex.org/I38517508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026608305","display_name":"Marcus Frohme","orcid":"https://orcid.org/0000-0001-9063-2682"},"institutions":[{"id":"https://openalex.org/I38517508","display_name":"Technical University of Applied Sciences Wildau","ror":"https://ror.org/00k62pe27","country_code":"DE","type":"education","lineage":["https://openalex.org/I38517508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcus Frohme","raw_affiliation_strings":["Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biotechnology and Functional Genomics, University of Applied Sciences Wildau, 15745 Wildau, Germany and 2High Performance Computing in Life Sciences/Bioinformatics, University of Applied Sciences Wildau, 15745 Wildau, Germany","institution_ids":["https://openalex.org/I38517508"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5073362874"],"corresponding_institution_ids":["https://openalex.org/I38517508"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2995,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.63127956,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"2013","issue":null,"first_page":"bat081","last_page":"bat081"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8350778222084045},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6751528978347778},{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.6152675747871399},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6085293292999268},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5408205986022949},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4809828996658325},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44730114936828613},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4133613109588623},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.4130176901817322},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21707794070243835}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8350778222084045},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6751528978347778},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.6152675747871399},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6085293292999268},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5408205986022949},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4809828996658325},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44730114936828613},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4133613109588623},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.4130176901817322},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21707794070243835},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bat081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat081/11198035/bat081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:24368831","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24368831","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2855505","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3871799","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:kobv.de-opus4-th-wildau:633","is_oa":true,"landing_page_url":"https://opus4.kobv.de/opus4-th-wildau/frontdoor/index/index/docId/633","pdf_url":null,"source":{"id":"https://openalex.org/S4306400195","display_name":"TH Wildau (Technical University of Applied Sciences Wildau)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I38517508","host_organization_name":"Technical University of Applied Sciences Wildau","host_organization_lineage":["https://openalex.org/I38517508"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database: The Journal of Biological Databases and Curation, 2013, S. 8","raw_type":"doc-type:article"}],"best_oa_location":{"id":"doi:10.1093/database/bat081","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat081","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat081/11198035/bat081.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142172193.pdf","grobid_xml":"https://content.openalex.org/works/W2142172193.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1529465401","https://openalex.org/W1922832738","https://openalex.org/W1981215030","https://openalex.org/W2049284870","https://openalex.org/W2067072887","https://openalex.org/W2118615056","https://openalex.org/W2122465391","https://openalex.org/W2146980885","https://openalex.org/W2168420558","https://openalex.org/W6843477419"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808","https://openalex.org/W2002476357","https://openalex.org/W1649706580","https://openalex.org/W3195608031"],"abstract_inverted_index":{"To":[0,45],"support":[1],"a":[2,10,55,63],"quantitative":[3],"real-time":[4],"polymerase":[5],"chain":[6],"reaction":[7],"standardization":[8],"project,":[9],"new":[11,19,79],"reference":[12],"gene":[13],"database":[14,20,81],"application":[15,21,82],"was":[16,22,49],"required.":[17],"The":[18,78],"built":[23],"with":[24,54],"the":[25,32,38,52],"explicit":[26],"goal":[27],"of":[28],"simplifying":[29],"not":[30],"only":[31],"development":[33],"process":[34],"but":[35],"also":[36],"making":[37],"user":[39,58],"interface":[40,59],"more":[41],"responsive":[42],"and":[43,69],"intuitive.":[44],"this":[46],"end,":[47],"CouchDB":[48],"used":[50],"as":[51,62],"backend":[53],"lightweight":[56],"dynamic":[57],"implemented":[60],"client-side":[61],"one-page":[64],"web":[65],"application.":[66],"Data":[67],"entry":[68],"curation":[70],"processes":[71],"were":[72],"streamlined":[73],"using":[74],"an":[75,88],"OpenRefine-based":[76],"workflow.":[77],"RefPrimeCouch":[80],"provides":[83],"its":[84],"data":[85],"online":[86],"under":[87],"Open":[89],"Database":[90,92],"License.":[91],"URL:":[93],"http://hpclife.th-wildau.de:5984/rpc/_design/rpc/view.html.":[94]},"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
