{"id":"https://openalex.org/W2149305892","doi":"https://doi.org/10.1093/database/bat066","title":"Capturing cooperative interactions with the PSI-MI format","display_name":"Capturing cooperative interactions with the PSI-MI format","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2149305892","doi":"https://doi.org/10.1093/database/bat066","mag":"2149305892","pmid":"https://pubmed.ncbi.nlm.nih.gov/24067240"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat066","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat066/16734524/bat066.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat066/16734524/bat066.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107211354","display_name":"Kim Van Roey","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Kim Van Roey","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026050023","display_name":"Sandra Orchard","orcid":"https://orcid.org/0000-0002-8878-3972"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Sandra Orchard","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068329665","display_name":"Samuel Kerrien","orcid":"https://orcid.org/0000-0002-3013-0469"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Samuel Kerrien","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083900945","display_name":"Marine Dumousseau","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Marine Dumousseau","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055191235","display_name":"Sylvie Ricard\u2010Blum","orcid":"https://orcid.org/0000-0001-9263-1851"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Sylvie Ricard-Blum","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066783652","display_name":"Henning Hermjakob","orcid":"https://orcid.org/0000-0001-8479-0262"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Henning Hermjakob","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004328524","display_name":"Toby J. Gibson","orcid":"https://orcid.org/0000-0003-0657-5166"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["DE","FR","GB"],"is_corresponding":false,"raw_author_name":"Toby J. Gibson","raw_affiliation_strings":["Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstrasse 1, D-69117 Heidelberg, Germany, 2Proteomics Services, EMBL Outstation, European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK and 3UMR 5086 CNRS - Universit\u00e9 Lyon 1, Institut de Biologie et Chimie des Prot\u00e9ines, 7 passage du Vercors, 69367 Lyon Cedex 07, France","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210138560","https://openalex.org/I87048295","https://openalex.org/I100532134","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0473,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.77136464,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"bat066","last_page":"bat066"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7116031646728516},{"id":"https://openalex.org/keywords/cooperativity","display_name":"Cooperativity","score":0.6564617156982422},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4828284680843353},{"id":"https://openalex.org/keywords/data-exchange","display_name":"Data exchange","score":0.48070913553237915},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4723718464374542},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.4564301371574402},{"id":"https://openalex.org/keywords/interdependence","display_name":"Interdependence","score":0.4163263738155365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4026813507080078},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.21485015749931335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1867801547050476},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18024921417236328},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15699166059494019}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7116031646728516},{"id":"https://openalex.org/C166014724","wikidata":"https://www.wikidata.org/wiki/Q337217","display_name":"Cooperativity","level":2,"score":0.6564617156982422},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4828284680843353},{"id":"https://openalex.org/C15845906","wikidata":"https://www.wikidata.org/wiki/Q1172338","display_name":"Data exchange","level":2,"score":0.48070913553237915},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4723718464374542},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.4564301371574402},{"id":"https://openalex.org/C185874996","wikidata":"https://www.wikidata.org/wiki/Q269699","display_name":"Interdependence","level":2,"score":0.4163263738155365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4026813507080078},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.21485015749931335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1867801547050476},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18024921417236328},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15699166059494019},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018797","descriptor_name":"Cell Cycle Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018797","descriptor_name":"Cell Cycle Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018797","descriptor_name":"Cell Cycle Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019925","descriptor_name":"Cyclin A","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051357","descriptor_name":"Cyclin-Dependent Kinase 2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bat066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat066","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat066/16734524/bat066.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:24067240","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24067240","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2772928","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3782717","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bat066","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat066","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat066/16734524/bat066.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G3966027469","display_name":null,"funder_award_id":"242129","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6173640100","display_name":null,"funder_award_id":"223411","funder_id":"https://openalex.org/F4320338377","funder_display_name":"FP7 Health"},{"id":"https://openalex.org/G6844935297","display_name":null,"funder_award_id":"FP7-HEALTH-2009","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G70745735","display_name":null,"funder_award_id":"242129","funder_id":"https://openalex.org/F4320338377","funder_display_name":"FP7 Health"},{"id":"https://openalex.org/G793586166","display_name":"Proteomics Standards International Molecular Exchange - Systematic Capture of Published Molecular Interaction Data","funder_award_id":"223411","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2149305892.pdf","grobid_xml":"https://content.openalex.org/works/W2149305892.grobid-xml"},"referenced_works_count":85,"referenced_works":["https://openalex.org/W1485631406","https://openalex.org/W1486227877","https://openalex.org/W1601437562","https://openalex.org/W1607505040","https://openalex.org/W1965076207","https://openalex.org/W1966719900","https://openalex.org/W1968102722","https://openalex.org/W1969345506","https://openalex.org/W1969359875","https://openalex.org/W1969709265","https://openalex.org/W1969939692","https://openalex.org/W1973582015","https://openalex.org/W1974088360","https://openalex.org/W1975847255","https://openalex.org/W1977329434","https://openalex.org/W1978221294","https://openalex.org/W1981632702","https://openalex.org/W1984873551","https://openalex.org/W1998093640","https://openalex.org/W1999150011","https://openalex.org/W2005392755","https://openalex.org/W2005525391","https://openalex.org/W2006061805","https://openalex.org/W2006712315","https://openalex.org/W2006933206","https://openalex.org/W2011400542","https://openalex.org/W2012398131","https://openalex.org/W2013009523","https://openalex.org/W2013853442","https://openalex.org/W2015094506","https://openalex.org/W2015117663","https://openalex.org/W2023333666","https://openalex.org/W2023506390","https://openalex.org/W2023910541","https://openalex.org/W2027690252","https://openalex.org/W2028133290","https://openalex.org/W2034229622","https://openalex.org/W2037011249","https://openalex.org/W2037442572","https://openalex.org/W2039975390","https://openalex.org/W2045288235","https://openalex.org/W2049625541","https://openalex.org/W2049682677","https://openalex.org/W2052685738","https://openalex.org/W2058527388","https://openalex.org/W2059447451","https://openalex.org/W2066962978","https://openalex.org/W2068146975","https://openalex.org/W2069162648","https://openalex.org/W2069165607","https://openalex.org/W2084915350","https://openalex.org/W2086760850","https://openalex.org/W2088820058","https://openalex.org/W2095420958","https://openalex.org/W2095867585","https://openalex.org/W2098188064","https://openalex.org/W2099131261","https://openalex.org/W2102225353","https://openalex.org/W2106447915","https://openalex.org/W2115152262","https://openalex.org/W2119392004","https://openalex.org/W2122705643","https://openalex.org/W2124676068","https://openalex.org/W2125810455","https://openalex.org/W2126759033","https://openalex.org/W2127894639","https://openalex.org/W2128121763","https://openalex.org/W2130687290","https://openalex.org/W2132629607","https://openalex.org/W2134742468","https://openalex.org/W2137531873","https://openalex.org/W2142937972","https://openalex.org/W2145080853","https://openalex.org/W2148385534","https://openalex.org/W2150908245","https://openalex.org/W2154392018","https://openalex.org/W2157605186","https://openalex.org/W2158439765","https://openalex.org/W2163361775","https://openalex.org/W2165253681","https://openalex.org/W2167786713","https://openalex.org/W2170652857","https://openalex.org/W2296679604","https://openalex.org/W2596045242","https://openalex.org/W4211017114"],"related_works":["https://openalex.org/W2043252151","https://openalex.org/W2497395447","https://openalex.org/W2361861616","https://openalex.org/W2427598648","https://openalex.org/W3041961068","https://openalex.org/W2047081348","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2120436863","https://openalex.org/W4233495035"],"abstract_inverted_index":{"The":[0],"complex":[1],"biological":[2],"processes":[3],"that":[4,19,133,165],"control":[5,39],"cellular":[6],"function":[7],"are":[8,22,30,78,154],"mediated":[9],"by":[10,71,127],"intricate":[11],"networks":[12],"of":[13,40,50,61,65,87,97,136,139,182],"molecular":[14,63,124],"interactions.":[15],"Accumulating":[16],"evidence":[17],"indicates":[18],"these":[20],"interactions":[21,29],"often":[23],"interdependent,":[24],"thus":[25],"acting":[26],"cooperatively.":[27],"Cooperative":[28],"prevalent":[31],"in":[32,75,161,187,197],"and":[33,37,102,172,180],"indispensible":[34],"for":[35,105,123],"reliable":[36],"robust":[38],"cell":[41],"regulation,":[42],"as":[43,69],"they":[44,77],"underlie":[45],"the":[46,62,82,88,95,117,146,177],"conditional":[47],"decision-making":[48],"capability":[49],"large":[51],"regulatory":[52],"complexes.":[53],"Despite":[54],"an":[55],"increased":[56],"focus":[57],"on":[58,193],"experimental":[59,191],"elucidation":[60],"details":[64],"cooperative":[66,106,158,183],"binding":[67],"events,":[68],"evidenced":[70],"their":[72],"growing":[73],"occurrence":[74],"literature,":[76],"currently":[79],"lacking":[80],"from":[81],"main":[83],"bioinformatics":[84],"resources.":[85],"One":[86],"contributing":[89],"factors":[90],"to":[91,116,145,156],"this":[92,111,194],"deficiency":[93],"is":[94,166],"lack":[96],"a":[98,151,162],"computer-readable":[99],"standard":[100],"representation":[101],"exchange":[103,179],"format":[104,122,164],"interaction":[107,125,159,184],"data.":[108],"To":[109],"tackle":[110],"shortcoming,":[112],"we":[113,153],"added":[114],"functionality":[115],"widely":[118],"used":[119],"PSI-MI":[120],"interchange":[121],"data":[126,160,171],"defining":[128],"new":[129],"controlled":[130],"vocabulary":[131],"terms":[132],"allow":[134],"annotation":[135],"different":[137],"aspects":[138],"cooperativity":[140],"without":[141],"making":[142],"structural":[143],"changes":[144],"underlying":[147],"XML":[148],"schema.":[149],"As":[150],"result,":[152],"able":[155],"capture":[157],"structured":[163],"backward":[167],"compatible":[168],"with":[169],"PSI-MI-based":[170],"applications.":[173],"This":[174],"will":[175,189],"facilitate":[176],"storage,":[178],"analysis":[181],"data,":[185],"which":[186],"turn":[188],"advance":[190],"research":[192],"fundamental":[195],"principle":[196],"biology.":[198]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
