{"id":"https://openalex.org/W2104148262","doi":"https://doi.org/10.1093/database/bat064","title":"BioC: a minimalist approach to interoperability for biomedical text processing","display_name":"BioC: a minimalist approach to interoperability for biomedical text processing","publication_year":2013,"publication_date":"2013-09-18","ids":{"openalex":"https://openalex.org/W2104148262","doi":"https://doi.org/10.1093/database/bat064","mag":"2104148262","pmid":"https://pubmed.ncbi.nlm.nih.gov/24048470"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat064/16734311/bat064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat064/16734311/bat064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111968060","display_name":"D. C. Comeau","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I4210155419","display_name":"Center for Systems Biology","ror":"https://ror.org/05r3dyn47","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210155419","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"D. C. Comeau","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, Harvard Medical School, Harvard University, Boston, MA 02115 USA, Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, Harvard Medical School, Harvard University, Boston, MA 02115 USA, Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I4210155419"]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008126200","display_name":"Rezarta Islamaj","orcid":"https://orcid.org/0000-0001-5651-1860"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"R. Islamaj Dogan","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054153288","display_name":"Paolo Ciccarese","orcid":"https://orcid.org/0000-0002-5156-2703"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"P. Ciccarese","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054773374","display_name":"K. B. Cohen","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"K. B. Cohen","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007203127","display_name":"Martin Krallinger","orcid":"https://orcid.org/0000-0002-2646-8782"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"M. Krallinger","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018678007","display_name":"Florian Leitner","orcid":"https://orcid.org/0000-0003-4458-504X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"F. Leitner","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"Z. Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085113833","display_name":"Yifan Peng","orcid":"https://orcid.org/0000-0001-9309-8331"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"Y. Peng","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025307528","display_name":"Fabio Rinaldi","orcid":"https://orcid.org/0000-0001-5718-5462"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"F. Rinaldi","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028161578","display_name":"Manabu Torii","orcid":"https://orcid.org/0000-0002-4825-0696"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"M. Torii","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"A. Valencia","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"K. Verspoor","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076813284","display_name":"Thomas C. Wiegers","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"T. C. Wiegers","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"C. H. Wu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111895206","display_name":"W. John Wilbur","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["AU","ES","US"],"is_corresponding":false,"raw_author_name":"W. J. Wilbur","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, 2Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, 3Harvard Medical School, Harvard University, Boston, MA 02115 USA, 4Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, 5Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, 6Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, 7Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, 8National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and 9Department of Biology, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I921990950","https://openalex.org/I136199984","https://openalex.org/I86501945","https://openalex.org/I42894916","https://openalex.org/I4210109390","https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":10.1794,"has_fulltext":true,"cited_by_count":180,"citation_normalized_percentile":{"value":0.98920718,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"2013","issue":"0","first_page":"bat064","last_page":"bat064"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.871917188167572},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6999608874320984},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.534402072429657},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5250492095947266},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5249933004379272},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5230653882026672},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5227063894271851},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5218523740768433},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5056290626525879},{"id":"https://openalex.org/keywords/text-processing","display_name":"Text processing","score":0.4796593487262726},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.45897406339645386},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45580601692199707},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3530155420303345},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2773817777633667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.871917188167572},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6999608874320984},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.534402072429657},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5250492095947266},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5249933004379272},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5230653882026672},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5227063894271851},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5218523740768433},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5056290626525879},{"id":"https://openalex.org/C2779500292","wikidata":"https://www.wikidata.org/wiki/Q14802672","display_name":"Text processing","level":2,"score":0.4796593487262726},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.45897406339645386},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45580601692199707},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3530155420303345},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2773817777633667},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/database/bat064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat064/16734311/bat064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:24048470","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24048470","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:91879","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Comeau, Donald C; Ciccarese, Paolo; Cohen, Kevin Bretonnel; Krallinger, Martin; Leitner, Florian; Lu, Zhiyong; Peng, Yifang; Rinaldi, Fabio; Torii, Manabu; Valencia, Alfonso; Verspoor, Karin; Wiegers, Thomas C; Wu, Cathy H; Wilbur, W John (2013). BIoC: a minimalist approach to interoperability for biomedical text processing. Database, 2013:bat064.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dash.harvard.edu:1/11879601","is_oa":true,"landing_page_url":"http://nrs.harvard.edu/urn-3:HUL.InstRepos:11879601","pdf_url":null,"source":{"id":"https://openalex.org/S4306401540","display_name":"Digital Access to Scholarship at Harvard (DASH) (Harvard University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I136199984","host_organization_name":"Harvard University","host_organization_lineage":["https://openalex.org/I136199984"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2875756","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3889917","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:jupiter.its.unimelb.edu.au:11343/268817","is_oa":false,"landing_page_url":"http://hdl.handle.net/11343/268817","pdf_url":null,"source":{"id":"https://openalex.org/S4306402500","display_name":"Minerva Access (University of Melbourne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165779595","host_organization_name":"The University of Melbourne","host_organization_lineage":["https://openalex.org/I165779595"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3889917","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3889917","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"},{"id":"doi:10.5167/uzh-91879","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-91879","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/database/bat064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat064","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat064/16734311/bat064.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7799999713897705}],"awards":[{"id":"https://openalex.org/G2003949275","display_name":null,"funder_award_id":"DBI-1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G250864464","display_name":"Intelligent computational control for complex structures","funder_award_id":"105315","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G2553168204","display_name":null,"funder_award_id":"LM008111","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2681206361","display_name":null,"funder_award_id":"5R01 LM009254-07","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G533832786","display_name":"Semi-automated semantic enrichment of biomedical literature","funder_award_id":"130558","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5870083451","display_name":"ABI Development: Integrative Bioinformatics for Knowledge Discovery of PTM Networks","funder_award_id":"1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5976505316","display_name":null,"funder_award_id":"LM009254","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6849084258","display_name":null,"funder_award_id":"G08LM010720","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G8273750425","display_name":null,"funder_award_id":"5R01 LM008111-08","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104148262.pdf","grobid_xml":"https://content.openalex.org/works/W2104148262.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W657583424","https://openalex.org/W1578602907","https://openalex.org/W1674586686","https://openalex.org/W1967768610","https://openalex.org/W1986579413","https://openalex.org/W1991154713","https://openalex.org/W1997306212","https://openalex.org/W2022484638","https://openalex.org/W2024940313","https://openalex.org/W2032566933","https://openalex.org/W2047782770","https://openalex.org/W2056616115","https://openalex.org/W2061167720","https://openalex.org/W2076498403","https://openalex.org/W2096297868","https://openalex.org/W2096797897","https://openalex.org/W2100644624","https://openalex.org/W2101727078","https://openalex.org/W2102395374","https://openalex.org/W2103147879","https://openalex.org/W2105481534","https://openalex.org/W2107005506","https://openalex.org/W2110432411","https://openalex.org/W2112331707","https://openalex.org/W2114702301","https://openalex.org/W2117770626","https://openalex.org/W2118582067","https://openalex.org/W2120253533","https://openalex.org/W2121844933","https://openalex.org/W2124001239","https://openalex.org/W2125552472","https://openalex.org/W2126276057","https://openalex.org/W2127014487","https://openalex.org/W2127241285","https://openalex.org/W2131887446","https://openalex.org/W2132180308","https://openalex.org/W2133431243","https://openalex.org/W2134967412","https://openalex.org/W2135455794","https://openalex.org/W2137937634","https://openalex.org/W2147641929","https://openalex.org/W2152228269","https://openalex.org/W2152398020","https://openalex.org/W2158418435","https://openalex.org/W2159980159","https://openalex.org/W2163965404","https://openalex.org/W2164666853","https://openalex.org/W2166817943","https://openalex.org/W2170325779","https://openalex.org/W2171278097","https://openalex.org/W2178441628","https://openalex.org/W2180034260","https://openalex.org/W2251841800","https://openalex.org/W2263893547","https://openalex.org/W2275130660","https://openalex.org/W2426119782","https://openalex.org/W2467554564","https://openalex.org/W2488680964","https://openalex.org/W2912026815","https://openalex.org/W2914463643","https://openalex.org/W2951273630","https://openalex.org/W2970030445","https://openalex.org/W3086319913"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W1989010305","https://openalex.org/W1837359179","https://openalex.org/W2165504147","https://openalex.org/W3183077996","https://openalex.org/W2619791004","https://openalex.org/W2113949609","https://openalex.org/W1968750695","https://openalex.org/W4385504528","https://openalex.org/W3214906853"],"abstract_inverted_index":{"A":[0],"vast":[1],"amount":[2],"of":[3,15,58,151,161],"scientific":[4],"information":[5,59],"is":[6,24,125],"encoded":[7],"in":[8,37,112,215],"natural":[9],"language":[10,42,118,135,195],"text,":[11],"and":[12,44,56,73,97,108,121,141,170,188,197,219],"the":[13,34,38,53,110,213],"quantity":[14],"such":[16,86,165],"text":[17,45,78,122,139],"has":[18,63],"become":[19,49],"so":[20],"great":[21],"that":[22],"it":[23,186,190],"no":[25],"longer":[26],"economically":[27],"feasible":[28],"to":[29,51,65,69,74,84,105,137,154,181,192,211],"have":[30,48],"a":[31,101,113,131,148],"human":[32],"as":[33,166,206,208],"first":[35],"step":[36],"search":[39,54],"process.":[40],"Natural":[41],"processing":[43,119],"mining":[46,123],"tools":[47,72,124],"essential":[50],"facilitate":[52],"for":[55],"extraction":[57],"from":[60,187],"text.":[61],"This":[62],"led":[64],"vigorous":[66],"research":[67],"efforts":[68,92],"create":[70,75],"useful":[71],"humanly":[76],"labeled":[77],"corpora,":[79],"which":[80],"can":[81],"be":[82,155],"used":[83],"improve":[85],"tools.":[87],"To":[88],"encourage":[89],"combining":[90],"these":[91],"into":[93],"larger,":[94],"more":[95,98],"powerful":[96],"capable":[99],"systems,":[100],"common":[102],"interchange":[103],"format":[104,136],"represent,":[106],"store":[107],"exchange":[109],"data":[111,220],"simple":[114,132,179],"manner":[115],"between":[116,172],"different":[117,152],"systems":[120],"highly":[126],"desirable.":[127],"Here":[128],"we":[129,177],"propose":[130],"extensible":[133,193],"mark-up":[134,194],"share":[138],"documents":[140],"annotations.":[142],"The":[143],"proposed":[144],"annotation":[145],"approach":[146,214],"allows":[147],"large":[149],"number":[150],"annotations":[153],"represented":[156],"including":[157],"sentences,":[158],"tokens,":[159],"parts":[160],"speech,":[162],"named":[163,173],"entities":[164],"genes":[167],"or":[168],"diseases":[169],"relationships":[171],"entities.":[174],"In":[175],"addition,":[176],"provide":[178],"code":[180],"hold":[182],"this":[183],"data,":[184],"read":[185],"write":[189],"back":[191],"files":[196],"perform":[198],"some":[199],"sample":[200],"processing.":[201],"We":[202],"also":[203],"describe":[204],"completed":[205],"well":[207],"ongoing":[209],"work":[210],"apply":[212],"several":[216],"directions.":[217],"Code":[218],"are":[221],"available":[222],"at":[223],"http://bioc.sourceforge.net/.":[224],"Database":[225],"URL:":[226],"http://bioc.sourceforge.net/":[227]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":29},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":27},{"year":2013,"cited_by_count":8}],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2025-10-10T00:00:00"}
