{"id":"https://openalex.org/W2101937993","doi":"https://doi.org/10.1093/database/bat050","title":"DBATE: database of alternative transcripts expression","display_name":"DBATE: database of alternative transcripts expression","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2101937993","doi":"https://doi.org/10.1093/database/bat050","mag":"2101937993","pmid":"https://pubmed.ncbi.nlm.nih.gov/23842462"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat050/21303115/bat050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat050/21303115/bat050.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085896954","display_name":"Valerio Bianchi","orcid":"https://orcid.org/0000-0001-9025-7923"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valerio Bianchi","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004336723","display_name":"Alessio Colantoni","orcid":"https://orcid.org/0000-0001-7402-0176"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessio Colantoni","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083483860","display_name":"Alberto Calderone","orcid":"https://orcid.org/0000-0003-0876-1595"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Calderone","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058613175","display_name":"Gabriele Ausiello","orcid":"https://orcid.org/0000-0002-8075-5774"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gabriele Ausiello","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044866381","display_name":"Fabrizio Ferr\u00e8","orcid":"https://orcid.org/0000-0003-2768-5305"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabrizio Ferr\u00e8","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089562631","display_name":"Manuela Helmer\u2010Citterich","orcid":"https://orcid.org/0000-0001-9530-7504"},"institutions":[{"id":"https://openalex.org/I116067653","display_name":"University of Rome Tor Vergata","ror":"https://ror.org/02p77k626","country_code":"IT","type":"education","lineage":["https://openalex.org/I116067653"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuela Helmer-Citterich","raw_affiliation_strings":["Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Molecular Bioinformatics, Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy and 2Department of Biology, University of Rome Tor Vergata, Via della Ricerca Scientifica s.n.c., Rome 00133, Italy","institution_ids":["https://openalex.org/I116067653"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0473,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.76852149,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"bat050","last_page":"bat050"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7575297355651855},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.7349360585212708},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.6038287281990051},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6034807562828064},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.595973014831543},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5710806250572205},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5554924607276917},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.484814316034317},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4383643865585327},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40070056915283203},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.37803900241851807},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.36595022678375244},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34776532649993896},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.290569007396698},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26288655400276184},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23121985793113708},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.14990296959877014},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14001771807670593}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7575297355651855},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.7349360585212708},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.6038287281990051},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6034807562828064},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.595973014831543},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5710806250572205},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5554924607276917},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.484814316034317},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4383643865585327},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40070056915283203},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.37803900241851807},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.36595022678375244},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34776532649993896},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.290569007396698},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26288655400276184},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23121985793113708},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.14990296959877014},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14001771807670593},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/bat050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat050/21303115/bat050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23842462","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23842462","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:art.torvergata.it:2108/79258","is_oa":true,"landing_page_url":"http://hdl.handle.net/2108/79258","pdf_url":"http://hdl.handle.net/2108/79258","source":{"id":"https://openalex.org/S4306400993","display_name":"Cineca Institutional Research Information System (Tor Vergata University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I116067653","host_organization_name":"University of Rome Tor Vergata","host_organization_lineage":["https://openalex.org/I116067653"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:cris.unibo.it:11585/372615","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/372615","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"1.01 Articolo in rivista"},{"id":"pmh:oai:iris.uniroma1.it:11573/871046","is_oa":true,"landing_page_url":"https://hdl.handle.net/11573/871046","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5654372","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5654372","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bat050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat050","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat050/21303115/bat050.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5899702863","display_name":null,"funder_award_id":"PRIN 2010","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2101937993.pdf","grobid_xml":"https://content.openalex.org/works/W2101937993.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1971363517","https://openalex.org/W1973401140","https://openalex.org/W1996044768","https://openalex.org/W1999574084","https://openalex.org/W2000875411","https://openalex.org/W2006368030","https://openalex.org/W2007294586","https://openalex.org/W2010271437","https://openalex.org/W2011920499","https://openalex.org/W2012649419","https://openalex.org/W2014946489","https://openalex.org/W2030180346","https://openalex.org/W2030880783","https://openalex.org/W2031111911","https://openalex.org/W2037442572","https://openalex.org/W2047941064","https://openalex.org/W2048849569","https://openalex.org/W2049485068","https://openalex.org/W2064800718","https://openalex.org/W2067302115","https://openalex.org/W2087377443","https://openalex.org/W2091161969","https://openalex.org/W2093253451","https://openalex.org/W2094678200","https://openalex.org/W2095867585","https://openalex.org/W2097065948","https://openalex.org/W2097860373","https://openalex.org/W2098383595","https://openalex.org/W2100305481","https://openalex.org/W2102869690","https://openalex.org/W2103017472","https://openalex.org/W2104222404","https://openalex.org/W2110957978","https://openalex.org/W2112544645","https://openalex.org/W2114884175","https://openalex.org/W2114912562","https://openalex.org/W2116398954","https://openalex.org/W2119003967","https://openalex.org/W2121790616","https://openalex.org/W2121895192","https://openalex.org/W2122884875","https://openalex.org/W2123402634","https://openalex.org/W2124985265","https://openalex.org/W2126740719","https://openalex.org/W2130687290","https://openalex.org/W2132352688","https://openalex.org/W2138773756","https://openalex.org/W2141885858","https://openalex.org/W2142314840","https://openalex.org/W2145241604","https://openalex.org/W2149197693","https://openalex.org/W2150635649","https://openalex.org/W2155804510","https://openalex.org/W2157221164","https://openalex.org/W2158637000","https://openalex.org/W2164718599","https://openalex.org/W2165253681","https://openalex.org/W2170819005","https://openalex.org/W2171169504","https://openalex.org/W2171777347","https://openalex.org/W2185743553","https://openalex.org/W2885727518","https://openalex.org/W2915108429","https://openalex.org/W4210347168","https://openalex.org/W4233334497","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2321791250","https://openalex.org/W4213427798","https://openalex.org/W2023199111","https://openalex.org/W2564462691","https://openalex.org/W2065030615","https://openalex.org/W2885403345","https://openalex.org/W2052498125","https://openalex.org/W4387768639","https://openalex.org/W2094867951","https://openalex.org/W1535548930"],"abstract_inverted_index":{"The":[0,97],"use":[1],"of":[2,18,43,57,111,114],"high-throughput":[3],"RNA":[4],"sequencing":[5],"technology":[6],"(RNA-seq)":[7],"allows":[8],"whole":[9],"transcriptome":[10,146],"analysis,":[11],"providing":[12],"an":[13,32],"unbiased":[14],"and":[15,34,54,71,78,82,142],"unabridged":[16],"view":[17],"alternative":[19,58],"transcript":[20],"expression.":[21],"Coupling":[22],"splicing":[23,59,89,115],"variant-specific":[24,93],"expression":[25,52,76,117,147],"with":[26],"its":[27],"functional":[28,55,79,106],"inference":[29],"is":[30,132,148],"still":[31],"open":[33],"difficult":[35],"issue":[36],"for":[37,87],"which":[38],"we":[39],"created":[40],"the":[41,109,145],"DataBase":[42],"Alternative":[44],"Transcripts":[45],"Expression":[46],"(DBATE),":[47],"a":[48,92,135],"web-based":[49],"repository":[50],"storing":[51],"values":[53,118],"annotation":[56,94],"variants.":[60],"We":[61],"processed":[62],"13":[63],"large":[64],"RNA-seq":[65],"panels":[66],"from":[67,84,126],"human":[68],"healthy":[69],"tissues":[70],"in":[72,123],"disease":[73],"conditions,":[74],"reporting":[75],"levels":[77],"annotations":[80,107],"gathered":[81],"integrated":[83],"different":[85,105],"sources":[86],"each":[88],"variant,":[90],"using":[91],"transfer":[95],"pipeline.":[96],"possibility":[98],"to":[99,128,138],"perform":[100],"complex":[101],"queries":[102],"by":[103],"cross-referencing":[104],"permits":[108],"retrieval":[110],"desired":[112],"subsets":[113],"variant":[116],"that":[119],"can":[120],"be":[121],"visualized":[122],"several":[124],"ways,":[125],"simple":[127],"more":[129],"informative.":[130],"DBATE":[131],"intended":[133],"as":[134],"novel":[136],"tool":[137],"help":[139],"appreciate":[140],"how,":[141],"possibly":[143],"why,":[144],"shaped.":[149],"DATABASE":[150],"URL:":[151],"http://bioinformatica.uniroma2.it/DBATE/.":[152]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-12T08:23:45.883708","created_date":"2025-10-10T00:00:00"}
