{"id":"https://openalex.org/W2141773193","doi":"https://doi.org/10.1093/database/bat041","title":"Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases","display_name":"Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2141773193","doi":"https://doi.org/10.1093/database/bat041","mag":"2141773193","pmid":"https://pubmed.ncbi.nlm.nih.gov/23842461"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat041/11197549/bat041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat041/11197549/bat041.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091440467","display_name":"Julien Gobeill","orcid":"https://orcid.org/0000-0001-9809-7741"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Julien Gobeill","raw_affiliation_strings":["Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017034341","display_name":"Emilie Pasche","orcid":"https://orcid.org/0000-0002-9118-5762"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emilie Pasche","raw_affiliation_strings":["Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022872913","display_name":"Dina Vishnyakova","orcid":"https://orcid.org/0000-0001-9101-5993"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dina Vishnyakova","raw_affiliation_strings":["Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042384742","display_name":"Patrick Ruch","orcid":"https://orcid.org/0000-0002-3374-2962"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patrick Ruch","raw_affiliation_strings":["Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]},{"raw_affiliation_string":"1Library and Information Sciences, University of Applied Sciences - HEG, CH-1227 Geneva, Switzerland and 2Division of Medical Information Sciences, University and Hospitals of Geneva, CH 1205 Geneva, Switzerland","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091440467"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.8451,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.91166367,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2013","issue":null,"first_page":"bat041","last_page":"bat041"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.8403416275978088},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8172173500061035},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.7154554128646851},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6967012286186218},{"id":"https://openalex.org/keywords/thesaurus","display_name":"Thesaurus","score":0.6596653461456299},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5268983840942383},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5241665840148926},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5227149128913879},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4347064197063446},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40792936086654663},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3269180655479431},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.32162123918533325}],"concepts":[{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.8403416275978088},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8172173500061035},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.7154554128646851},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6967012286186218},{"id":"https://openalex.org/C2778698081","wikidata":"https://www.wikidata.org/wiki/Q179797","display_name":"Thesaurus","level":2,"score":0.6596653461456299},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5268983840942383},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5241665840148926},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5227149128913879},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4347064197063446},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40792936086654663},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3269180655479431},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.32162123918533325},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/database/bat041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat041/11197549/bat041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23842461","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23842461","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:unige.ch:aou:unige:33308","is_oa":true,"landing_page_url":"https://archive-ouverte.unige.ch/unige:33308","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 1758-0463","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doc.rero.ch:20140113114136-JF","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2702506","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3706742","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:hesso.tind.io:445","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/445","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/445","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3706742","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3706742","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bat041","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat041","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat041/11197549/bat041.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141773193.pdf","grobid_xml":"https://content.openalex.org/works/W2141773193.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W27344939","https://openalex.org/W1555217731","https://openalex.org/W1574901103","https://openalex.org/W1603229901","https://openalex.org/W1970863518","https://openalex.org/W1976316416","https://openalex.org/W1987185282","https://openalex.org/W2005422315","https://openalex.org/W2015487728","https://openalex.org/W2056119436","https://openalex.org/W2091940856","https://openalex.org/W2091978351","https://openalex.org/W2094726706","https://openalex.org/W2097553584","https://openalex.org/W2099369363","https://openalex.org/W2103017472","https://openalex.org/W2105157020","https://openalex.org/W2105316288","https://openalex.org/W2114370860","https://openalex.org/W2115024484","https://openalex.org/W2118582067","https://openalex.org/W2121570534","https://openalex.org/W2122763686","https://openalex.org/W2126276057","https://openalex.org/W2127603354","https://openalex.org/W2132784310","https://openalex.org/W2144949988","https://openalex.org/W2148118756","https://openalex.org/W2150452501","https://openalex.org/W2150850055","https://openalex.org/W2152143870","https://openalex.org/W2166240318","https://openalex.org/W4255065712","https://openalex.org/W6601095967","https://openalex.org/W6651487525","https://openalex.org/W6674104329","https://openalex.org/W6677439653","https://openalex.org/W6682139550"],"related_works":["https://openalex.org/W2376314740","https://openalex.org/W97423259","https://openalex.org/W2393185060","https://openalex.org/W2087742606","https://openalex.org/W2081647779","https://openalex.org/W2120460904","https://openalex.org/W38394648","https://openalex.org/W2402760123","https://openalex.org/W3093733860","https://openalex.org/W2141773193"],"abstract_inverted_index":{"The":[0],"available":[1],"curated":[2,122,147],"data":[3],"lag":[4],"behind":[5],"current":[6],"biological":[7],"knowledge":[8,127,157,259],"contained":[9,124],"in":[10,40,107,125,151,218,234,272,278,281,285],"the":[11,30,59,84,98,117,178,209],"literature.":[12],"Text":[13],"mining":[14,68],"can":[15],"assist":[16],"biologists":[17],"and":[18,22,63,87,120,137,189,193,293],"curators":[19],"to":[20,61,97,129,141,203,247,257,274,296,299],"locate":[21],"access":[23],"this":[24,156],"knowledge,":[25],"for":[26,70,154,177,185,205,216,249,276],"instance":[27],"by":[28],"characterizing":[29],"functional":[31,132,183],"profile":[32,184],"of":[33,101,146,180],"publications.":[34],"Gene":[35],"Ontology":[36],"(GO)":[37],"category":[38],"assignment":[39],"free":[41],"text":[42,67,86,119],"already":[43,121],"supports":[44],"various":[45],"applications,":[46],"such":[47,289],"as":[48],"powering":[49],"ontology-based":[50],"search":[51],"engines,":[52],"finding":[53],"curation-relevant":[54],"articles":[55],"(triage)":[56],"or":[57,284],"helping":[58],"curator":[60],"identify":[62],"encode":[64],"functions.":[65],"Popular":[66],"tools":[69],"GO":[71,88,102,134,210,235],"classification":[72],"are":[73,198,291],"based":[74],"on":[75,172,200,213],"so":[76],"called":[77],"thesaurus-based--or":[78],"dictionary-based--approaches,":[79],"which":[80,104],"exploit":[81,114,142],"similarities":[82,115],"between":[83,116],"input":[85,118],"terms":[89,211],"themselves.":[90],"But":[91],"their":[92,201],"effectiveness":[93,240],"remains":[94],"limited":[95],"owing":[96],"complex":[99],"nature":[100],"terms,":[103],"rarely":[105],"occur":[106],"text.":[108],"In":[109,254],"contrast,":[110,255],"machine":[111,168,263],"learning":[112,169,264],"approaches":[113],"instances":[123],"a":[126,131,143,162,167,173,182,206,226],"base":[128,260],"infer":[130],"profile.":[133],"Annotations":[135],"(GOA)":[136],"MEDLINE":[138,187],"make":[139],"possible":[140],"growing":[144],"amount":[145],"abstracts":[148],"(97":[149],"000":[150],"November":[152],"2012)":[153],"populating":[155],"base.":[158],"Our":[159],"study":[160],"compares":[161],"state-of-the-art":[163],"thesaurus-based":[164,238],"system":[165,170,239,265],"with":[166],"(based":[171],"k-Nearest":[174],"Neighbours":[175],"algorithm)":[176],"task":[179],"proposing":[181],"unseen":[186],"abstracts,":[188],"shows":[190],"how":[191],"resources":[192],"performances":[194],"have":[195],"evolved.":[196],"Systems":[197],"evaluated":[199],"ability":[202],"propose":[204],"given":[207],"abstract":[208],"(2.8":[212],"average)":[214],"used":[215],"curation":[217],"GOA.":[219],"We":[220],"show":[221],"that":[222],"since":[223],"2006,":[224],"although":[225],"massive":[227],"effort":[228],"was":[229],"put":[230],"into":[231],"adding":[232],"synonyms":[233],"(+300%),":[236],"our":[237,262],"is":[241],"rather":[242],"constant,":[243],"reaching":[244,269],"from":[245,270],"0.28":[246],"0.31":[248],"Recall":[250],"at":[251],"20":[252],"(R20).":[253],"thanks":[256],"its":[258],"growth,":[261],"has":[266],"steadily":[267],"improved,":[268],"0.38":[271],"2006":[273],"0.56":[275],"R20":[277],"2012.":[279],"Integrated":[280],"semi-automatic":[282],"workflows":[283],"fully":[286],"automatic":[287],"pipelines,":[288],"systems":[290],"more":[292,294],"efficient":[295],"provide":[297],"assistance":[298],"biologists.":[300],"DATABASE":[301],"URL:":[302],"http://eagl.unige.ch/GOCat/":[303]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
