{"id":"https://openalex.org/W2121666644","doi":"https://doi.org/10.1093/database/bat039","title":"TIMBAL v2: update of a database holding small molecules modulating protein\u2013protein interactions","display_name":"TIMBAL v2: update of a database holding small molecules modulating protein\u2013protein interactions","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2121666644","doi":"https://doi.org/10.1093/database/bat039","mag":"2121666644","pmid":"https://pubmed.ncbi.nlm.nih.gov/23766369"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat039/11197522/bat039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat039/11197522/bat039.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060273811","display_name":"Al\u00edcia P. Higueruelo","orcid":"https://orcid.org/0000-0001-5616-6593"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alicia P. Higueruelo","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007957164","display_name":"Harry Jubb","orcid":"https://orcid.org/0000-0001-6094-0975"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Harry Jubb","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001029093","display_name":"Tom L. Blundell","orcid":"https://orcid.org/0000-0002-2708-8992"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tom L. Blundell","raw_affiliation_strings":["Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Cambridge, Cambridge CB1 2GA, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.6381,"has_fulltext":true,"cited_by_count":91,"citation_normalized_percentile":{"value":0.9565537,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"2013","issue":null,"first_page":"bat039","last_page":"bat039"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9185458421707153},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5623037219047546},{"id":"https://openalex.org/keywords/small-molecule","display_name":"Small molecule","score":0.5272830128669739},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.46464109420776367},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.41765207052230835},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3954882323741913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3442636728286743},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.32100149989128113},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.30475854873657227},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2886417508125305},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12780827283859253}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9185458421707153},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5623037219047546},{"id":"https://openalex.org/C161624437","wikidata":"https://www.wikidata.org/wiki/Q1988322","display_name":"Small molecule","level":2,"score":0.5272830128669739},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.46464109420776367},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.41765207052230835},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3954882323741913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3442636728286743},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.32100149989128113},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.30475854873657227},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2886417508125305},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12780827283859253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D054852","descriptor_name":"Small Molecule Libraries","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bat039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat039/11197522/bat039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23766369","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23766369","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2677835","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3681332","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3681332","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3681332","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bat039","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat039","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat039/11197522/bat039.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320320273","display_name":"University of Cambridge","ror":"https://ror.org/013meh722"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2121666644.pdf","grobid_xml":"https://content.openalex.org/works/W2121666644.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1993496775","https://openalex.org/W1995833243","https://openalex.org/W2037856618","https://openalex.org/W2038365928","https://openalex.org/W2083441741","https://openalex.org/W2090983338","https://openalex.org/W2096541451","https://openalex.org/W2102791444","https://openalex.org/W2128247932","https://openalex.org/W2130479394","https://openalex.org/W2138314961","https://openalex.org/W2157605186","https://openalex.org/W2420579883","https://openalex.org/W2612240612","https://openalex.org/W6631828510","https://openalex.org/W6648727236","https://openalex.org/W6649315043","https://openalex.org/W6659733555","https://openalex.org/W6659954389","https://openalex.org/W6671680176","https://openalex.org/W6673477139","https://openalex.org/W6674494894","https://openalex.org/W6675478566","https://openalex.org/W6679179543","https://openalex.org/W6680778860","https://openalex.org/W6683369149"],"related_works":["https://openalex.org/W3181892255","https://openalex.org/W3132544722","https://openalex.org/W4232154957","https://openalex.org/W4292058683","https://openalex.org/W4307362031","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W4375844720","https://openalex.org/W4376646754","https://openalex.org/W4389222350"],"abstract_inverted_index":{"TIMBAL":[0],"is":[1],"a":[2],"database":[3,20],"holding":[4],"molecules":[5,41],"of":[6],"molecular":[7],"weight":[8],"<1200":[9],"Daltons":[10],"that":[11,35],"modulate":[12],"protein-protein":[13,28],"interactions.":[14],"Since":[15],"its":[16],"first":[17],"release,":[18],"the":[19],"has":[21],"been":[22],"extended":[23],"to":[24],"cover":[25],"50":[26],"known":[27],"interactions":[29],"drug":[30],"targets,":[31],"including":[32],"protein":[33],"complexes":[34],"can":[36],"be":[37],"stabilized":[38],"by":[39],"small":[40,55],"with":[42],"therapeutic":[43],"effect.":[44],"The":[45],"resource":[46],"contains":[47],"14":[48],"890":[49],"data":[50],"points":[51],"for":[52],"6896":[53],"distinct":[54],"molecules.":[56],"UniProt":[57],"codes":[58],"and":[59],"Protein":[60],"Data":[61],"Bank":[62],"entries":[63],"are":[64],"also":[65],"included.":[66],"Database":[67],"URL:":[68],"http://www-cryst.bioc.cam.ac.uk/timbal":[69]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
