{"id":"https://openalex.org/W2125765581","doi":"https://doi.org/10.1093/database/bat020","title":"Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts","display_name":"Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2125765581","doi":"https://doi.org/10.1093/database/bat020","mag":"2125765581","pmid":"https://pubmed.ncbi.nlm.nih.gov/23599415"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat020","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat020/11196671/bat020.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat020/11196671/bat020.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024881923","display_name":"Mariana Neves","orcid":"https://orcid.org/0000-0002-6488-2394"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":true,"raw_author_name":"Mariana Neves","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087616755","display_name":"Alexander Damaschun","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Alexander Damaschun","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015763581","display_name":"Nancy Mah","orcid":"https://orcid.org/0000-0002-1240-8076"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Nancy Mah","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038027438","display_name":"Fritz Lekschas","orcid":"https://orcid.org/0000-0001-8432-4835"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Fritz Lekschas","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085394780","display_name":"Stefanie Seltmann","orcid":"https://orcid.org/0000-0002-8411-3226"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Stefanie Seltmann","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011842230","display_name":"Harald Stachelscheid","orcid":"https://orcid.org/0000-0002-9283-4605"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Harald Stachelscheid","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055724941","display_name":"Jean\u2212Fred Fontaine","orcid":"https://orcid.org/0000-0002-1101-4091"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Jean-Fred Fontaine","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070999479","display_name":"Armin Kurtz","orcid":"https://orcid.org/0000-0003-3301-6546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Andreas Kurtz","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt-Universit\u00e4t zu Berlin, Knowledge Management in Bioinformatics, Berlin, 10099, Germany, 2Berlin Brandenburg Center for Regenerative Therapies, Charit\u00e9, Berlin, 13353, Germany, 3Max Delbr\u00fcck Center for Molecular Medicine, Berlin, 13092, Germany and 4Adult Stem Cell Research Center, Seoul National University, College of Veterinary Medicine, Seoul, 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024881923"],"corresponding_institution_ids":["https://openalex.org/I139264467","https://openalex.org/I205582932","https://openalex.org/I39343248","https://openalex.org/I4210127521","https://openalex.org/I7877124"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.9266,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.86115091,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"bat020","last_page":"bat020"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13280","display_name":"Biomedical and Engineering Education","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9656999707221985,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.8468921184539795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5614017248153687},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.5346224904060364},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.5344853401184082},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45839723944664},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4365026354789734},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42191463708877563},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3858007788658142},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28218287229537964},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17027586698532104},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10195991396903992},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09548872709274292}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.8468921184539795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5614017248153687},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.5346224904060364},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.5344853401184082},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45839723944664},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4365026354789734},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42191463708877563},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3858007788658142},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28218287229537964},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17027586698532104},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10195991396903992},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09548872709274292}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019992","descriptor_name":"Databases as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/database/bat020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat020","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat020/11196671/bat020.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23599415","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23599415","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:15298","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2628247","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3629873","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:s-space.snu.ac.kr:10371/192321","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/192321","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/database/bat020","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat020","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat020/11196671/bat020.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.5699999928474426}],"awards":[{"id":"https://openalex.org/G8465096193","display_name":null,"funder_award_id":"KU 851/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323313","display_name":"Turun Yliopisto","ror":"https://ror.org/05vghhr25"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2125765581.pdf","grobid_xml":"https://content.openalex.org/works/W2125765581.grobid-xml"},"referenced_works_count":78,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W1236321187","https://openalex.org/W1527927437","https://openalex.org/W1598005774","https://openalex.org/W1757909678","https://openalex.org/W1786456657","https://openalex.org/W1967494780","https://openalex.org/W1968537328","https://openalex.org/W1976097579","https://openalex.org/W1977223481","https://openalex.org/W1977748891","https://openalex.org/W1989127872","https://openalex.org/W1996002274","https://openalex.org/W2040610660","https://openalex.org/W2047782770","https://openalex.org/W2048059249","https://openalex.org/W2048164849","https://openalex.org/W2053673723","https://openalex.org/W2054868414","https://openalex.org/W2062163602","https://openalex.org/W2071038402","https://openalex.org/W2094726706","https://openalex.org/W2097300420","https://openalex.org/W2097456924","https://openalex.org/W2099701465","https://openalex.org/W2100627415","https://openalex.org/W2101265630","https://openalex.org/W2103308144","https://openalex.org/W2105481534","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2108791029","https://openalex.org/W2109487646","https://openalex.org/W2113583039","https://openalex.org/W2115504560","https://openalex.org/W2116034137","https://openalex.org/W2118582067","https://openalex.org/W2121570534","https://openalex.org/W2121844933","https://openalex.org/W2122402213","https://openalex.org/W2122542159","https://openalex.org/W2123152121","https://openalex.org/W2124798372","https://openalex.org/W2125712079","https://openalex.org/W2128036577","https://openalex.org/W2129113459","https://openalex.org/W2133480872","https://openalex.org/W2133993935","https://openalex.org/W2135548107","https://openalex.org/W2139259976","https://openalex.org/W2141593186","https://openalex.org/W2147018385","https://openalex.org/W2147154106","https://openalex.org/W2147641929","https://openalex.org/W2148014577","https://openalex.org/W2148130205","https://openalex.org/W2150850055","https://openalex.org/W2152228269","https://openalex.org/W2154142897","https://openalex.org/W2157059938","https://openalex.org/W2157641143","https://openalex.org/W2166057395","https://openalex.org/W2169918010","https://openalex.org/W2171000191","https://openalex.org/W2394597347","https://openalex.org/W2495004097","https://openalex.org/W4285719527","https://openalex.org/W4320800138","https://openalex.org/W6600347082","https://openalex.org/W6638185459","https://openalex.org/W6644480822","https://openalex.org/W6644678941","https://openalex.org/W6662590293","https://openalex.org/W6668458766","https://openalex.org/W6675914680","https://openalex.org/W6676058677","https://openalex.org/W6680529274","https://openalex.org/W6712116042"],"related_works":["https://openalex.org/W3037187668","https://openalex.org/W2380685755","https://openalex.org/W2392243736","https://openalex.org/W2252100032","https://openalex.org/W2963436428","https://openalex.org/W86652014","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":{"Biomedical":[0],"literature":[1,85],"curation":[2,69,86,106],"is":[3,27,108,194,211],"the":[4,68,72,122,167,176,183,189,200],"process":[5],"of":[6,54,59,71,77,125,136,155,157,164,166,188],"automatically":[7],"and/or":[8],"manually":[9],"deriving":[10],"knowledge":[11],"from":[12,84,140],"scientific":[13],"publications":[14],"and":[15,57,62,87,96,99,203,207],"recording":[16],"it":[17],"into":[18],"specialized":[19],"databases":[20],"for":[21,132,182,197,218],"structured":[22],"delivery":[23],"to":[24,89,213],"users.":[25],"It":[26],"a":[28,75,133,162,205,215],"slow,":[29],"error-prone,":[30],"complex,":[31],"costly":[32],"and,":[33],"yet,":[34],"highly":[35],"important":[36],"task.":[37,185],"Previous":[38],"experiences":[39],"have":[40,151],"proven":[41],"that":[42,172,192,204],"text":[43,116],"mining":[44,117],"can":[45],"assist":[46],"in":[47,52,102,114,146,161,199],"its":[48],"many":[49],"phases,":[50],"especially,":[51],"triage":[53],"relevant":[55],"documents":[56],"extraction":[58],"named":[60],"entities":[61],"biological":[63],"events.":[64],"Here,":[65],"we":[66,173],"present":[67],"pipeline":[70,107,181],"CellFinder":[73],"database,":[74],"repository":[76],"cell":[78,91,93,147],"research,":[79],"which":[80,141,170],"includes":[81],"data":[82,134,159],"derived":[83],"microarrays":[88],"identify":[90],"types,":[92],"lines,":[94],"organs":[95],"so":[97],"forth,":[98],"especially":[100],"patterns":[101],"gene":[103,143],"expression.":[104],"The":[105],"based":[109],"on":[110,175],"freely":[111],"available":[112],"tools":[113],"all":[115],"steps,":[118],"as":[119,121],"well":[120],"manual":[123],"validation":[124],"extracted":[126,168],"data.":[127],"Preliminary":[128],"results":[129],"are":[130,174],"presented":[131],"set":[135],"2376":[137],"full":[138],"texts":[139],">4500":[142],"expression":[144],"events":[145],"or":[148],"anatomical":[149],"part":[150],"been":[152],"extracted.":[153],"Validation":[154],"half":[156],"this":[158],"resulted":[160],"precision":[163],"~50%":[165],"data,":[169],"indicates":[171],"right":[177],"track":[178],"with":[179],"our":[180],"proposed":[184],"However,":[186],"evaluation":[187],"methods":[190],"shows":[191],"there":[193],"still":[195],"room":[196],"improvement":[198],"named-entity":[201],"recognition":[202],"larger":[206],"more":[208],"robust":[209],"corpus":[210],"needed":[212],"achieve":[214],"better":[216],"performance":[217],"event":[219],"extraction.":[220],"Database":[221],"URL:":[222],"http://www.cellfinder.org/":[223]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}