{"id":"https://openalex.org/W2157973714","doi":"https://doi.org/10.1093/database/bat002","title":"CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes","display_name":"CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2157973714","doi":"https://doi.org/10.1093/database/bat002","mag":"2157973714","pmid":"https://pubmed.ncbi.nlm.nih.gov/23396301"},"language":"en","primary_location":{"id":"doi:10.1093/database/bat002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat002/16732484/bat002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat002/16732484/bat002.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076004957","display_name":"Marialva Sinigaglia","orcid":"https://orcid.org/0000-0002-8324-6860"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Marialva Sinigaglia","raw_affiliation_strings":["NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015688397","display_name":"Dinler A. Antunes","orcid":"https://orcid.org/0000-0001-7947-6455"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Dinler Amaral Antunes","raw_affiliation_strings":["NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034774826","display_name":"Maur\u00edcio Rigo","orcid":"https://orcid.org/0000-0002-1584-6194"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Maur\u00edcio Menegatti Rigo","raw_affiliation_strings":["NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015292787","display_name":"Jos\u00e9 Artur Bogo Chies","orcid":"https://orcid.org/0000-0001-7025-0660"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Artur Bogo Chies","raw_affiliation_strings":["NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I130442723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079866895","display_name":"Gustavo Fioravanti Vieira","orcid":"https://orcid.org/0000-0002-2380-8059"},"institutions":[{"id":"https://openalex.org/I130442723","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64","country_code":"BR","type":"education","lineage":["https://openalex.org/I130442723"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gustavo Fioravanti Vieira","raw_affiliation_strings":["NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NBLI - N\u00facleo de Bioinform\u00e1tica do Laborat\u00f3rio de Imunogen\u00e9tica, Department of Genetics, Universidade Federal do Rio Grande do Sul, 9500 Bento Gon\u00e7alves Avenue, Bldg 43323, Rm 225, 91501-970 Porto Alegre, RS, Brazil","institution_ids":["https://openalex.org/I130442723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.1969,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.79144007,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2013","issue":null,"first_page":"bat002","last_page":"bat002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/major-histocompatibility-complex","display_name":"Major histocompatibility complex","score":0.6914969682693481},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.6247472763061523},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6073793768882751},{"id":"https://openalex.org/keywords/immunogenicity","display_name":"Immunogenicity","score":0.494219571352005},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4436117112636566},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.43552449345588684},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.4290074110031128},{"id":"https://openalex.org/keywords/human-leukocyte-antigen","display_name":"Human leukocyte antigen","score":0.42603799700737},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.42425310611724854},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4135389029979706},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28830331563949585},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.2634273171424866},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1481429636478424},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11235055327415466},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10207483172416687}],"concepts":[{"id":"https://openalex.org/C207936829","wikidata":"https://www.wikidata.org/wiki/Q423163","display_name":"Major histocompatibility complex","level":3,"score":0.6914969682693481},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.6247472763061523},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6073793768882751},{"id":"https://openalex.org/C2780868878","wikidata":"https://www.wikidata.org/wiki/Q1660197","display_name":"Immunogenicity","level":3,"score":0.494219571352005},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4436117112636566},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.43552449345588684},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.4290074110031128},{"id":"https://openalex.org/C188280979","wikidata":"https://www.wikidata.org/wiki/Q911125","display_name":"Human leukocyte antigen","level":3,"score":0.42603799700737},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.42425310611724854},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4135389029979706},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28830331563949585},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.2634273171424866},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1481429636478424},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11235055327415466},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10207483172416687},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003429","descriptor_name":"Cross Reactions","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015999","descriptor_name":"Multivariate Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018360","descriptor_name":"Crystallography, X-Ray","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bat002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat002/16732484/bat002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23396301","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23396301","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2568295","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC3567486","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3567486","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3567486","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bat002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bat002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bat002/16732484/bat002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4246447654","display_name":null,"funder_award_id":"23038","funder_id":"https://openalex.org/F4320321091","funder_display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior"}],"funders":[{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"},{"id":"https://openalex.org/F4320322987","display_name":"Universidade Federal do Rio Grande do Sul","ror":"https://ror.org/041yk2d64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2157973714.pdf","grobid_xml":"https://content.openalex.org/works/W2157973714.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W154754308","https://openalex.org/W1607931568","https://openalex.org/W1676990377","https://openalex.org/W1933777541","https://openalex.org/W1965171214","https://openalex.org/W1988509058","https://openalex.org/W1997508510","https://openalex.org/W2016088798","https://openalex.org/W2018293931","https://openalex.org/W2021315324","https://openalex.org/W2021786953","https://openalex.org/W2037312364","https://openalex.org/W2042167668","https://openalex.org/W2060259273","https://openalex.org/W2061440214","https://openalex.org/W2082667898","https://openalex.org/W2086045624","https://openalex.org/W2088143274","https://openalex.org/W2099514777","https://openalex.org/W2108087009","https://openalex.org/W2109130469","https://openalex.org/W2129168778","https://openalex.org/W2131736388","https://openalex.org/W2134967712","https://openalex.org/W2137879329","https://openalex.org/W2146074801","https://openalex.org/W2163881579","https://openalex.org/W2883755802","https://openalex.org/W4211196614"],"related_works":["https://openalex.org/W2019183242","https://openalex.org/W2411629273","https://openalex.org/W1558421445","https://openalex.org/W4248486573","https://openalex.org/W2005276320","https://openalex.org/W2004499962","https://openalex.org/W1596377987","https://openalex.org/W2068694905","https://openalex.org/W2181422716","https://openalex.org/W2083795075"],"abstract_inverted_index":{"The":[0,19,72,96],"CrossTope":[1],"is":[2],"a":[3,40,117],"highly":[4],"curate":[5],"repository":[6],"of":[7,10,36,93,126],"three-dimensional":[8],"structures":[9,98],"peptide:major":[11],"histocompatibility":[12],"complex":[13],"(MHC)":[14],"class":[15],"I":[16],"complexes":[17,20,56],"(pMHC-I).":[18],"hosted":[21],"by":[22,31,44],"this":[23,48],"databank":[24],"were":[25],"obtained":[26],"in":[27,33,108,116],"protein":[28],"databases":[29],"and":[30,60,80,83,99],"large-scale":[32],"silico":[34],"construction":[35],"pMHC-I":[37,55,94],"structures,":[38],"using":[39],"new":[41],"approach":[42],"developed":[43],"our":[45],"group.":[46],"At":[47],"moment,":[49],"the":[50,89,124],"database":[51,70],"contains":[52],"182":[53],"'non-redundant'":[54],"from":[57,88],"two":[58,61],"human":[59],"murine":[62],"alleles.":[63],"A":[64],"web":[65],"server":[66],"provides":[67],"interface":[68],"for":[69],"query.":[71],"user":[73],"can":[74,101],"download":[75],"(i)":[76],"structure":[77],"coordinate":[78],"files":[79],"(ii)":[81],"topological":[82],"charges":[84],"distribution":[85],"maps":[86,100],"images":[87],"T-cell":[90],"receptor-interacting":[91],"surface":[92],"complexes.":[95],"retrieved":[97],"be":[102],"used":[103],"to":[104,111,122],"cluster":[105],"similar":[106],"epitopes":[107],"cross-reactivity":[109],"approaches,":[110],"analyse":[112],"viral":[113],"escape":[114],"mutations":[115],"structural":[118],"level":[119],"or":[120],"even":[121],"improve":[123],"immunogenicity":[125],"tumour":[127],"antigens.":[128],"Database":[129],"URL:":[130],"http://www.crosstope.com.br.":[131]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
