{"id":"https://openalex.org/W2115378879","doi":"https://doi.org/10.1093/database/bas059","title":"Evidence classification of high-throughput protocols and confidence integration in RegulonDB","display_name":"Evidence classification of high-throughput protocols and confidence integration in RegulonDB","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W2115378879","doi":"https://doi.org/10.1093/database/bas059","mag":"2115378879","pmid":"https://pubmed.ncbi.nlm.nih.gov/23327937"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas059/16732230/bas059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas059/16732230/bas059.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109769947","display_name":"Verena Weiss","orcid":null},"institutions":[{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Verena Weiss","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060491883","display_name":"Alejandra Medina-Rivera","orcid":"https://orcid.org/0000-0002-7912-2718"},"institutions":[{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alejandra Medina-Rivera","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100885807","display_name":"Araceli M. Huerta","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Araceli M. Huerta","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026565466","display_name":"Alberto Santos-Zavaleta","orcid":"https://orcid.org/0000-0002-2178-4006"},"institutions":[{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alberto Santos-Zavaleta","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091338305","display_name":"Heladia Salgado","orcid":"https://orcid.org/0000-0002-3166-5801"},"institutions":[{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Heladia Salgado","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039196751","display_name":"Enrique Morett","orcid":"https://orcid.org/0000-0001-5723-0032"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]},{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Enrique Morett","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079232768","display_name":"Julio Collado\u2010Vides","orcid":"https://orcid.org/0000-0001-8780-7664"},"institutions":[{"id":"https://openalex.org/I884181516","display_name":"Universidad Aut\u00f3noma del Estado de Morelos","ror":"https://ror.org/03rzb4f20","country_code":"MX","type":"education","lineage":["https://openalex.org/I884181516"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Julio Collado-Vides","raw_affiliation_strings":["Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico"],"affiliations":[{"raw_affiliation_string":"Programa de Gen\u00f3mica Computacional, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 565-A, Cuernavaca, Morelos 62100 and 2Departamento de Ingenier\u00eda Celular y Biocat\u00e1lisis, Instituto de Biotecnolog\u00eda, Universidad Nacional Aut\u00f3noma de M\u00e9xico, A.P. 510-3, Cuernavaca, Morelos 62100, Mexico","institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5109769947"],"corresponding_institution_ids":["https://openalex.org/I884181516","https://openalex.org/I8961855"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.0874,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.81452967,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2013","issue":null,"first_page":"bas059","last_page":"bas059"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.7076694965362549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7076612114906311},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43164947628974915},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.13221073150634766}],"concepts":[{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.7076694965362549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7076612114906311},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43164947628974915},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.13221073150634766},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013223","descriptor_name":"Statistics as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015964","descriptor_name":"Gene Expression Regulation, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018085","descriptor_name":"Regulon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D024363","descriptor_name":"Transcription Initiation Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056510","descriptor_name":"Position-Specific Scoring Matrices","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas059/16732230/bas059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23327937","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23327937","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3548332","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3548332","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas059","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas059","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas059/16732230/bas059.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.5}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115378879.pdf","grobid_xml":"https://content.openalex.org/works/W2115378879.grobid-xml"},"referenced_works_count":110,"referenced_works":["https://openalex.org/W17271087","https://openalex.org/W29709319","https://openalex.org/W1485773442","https://openalex.org/W1511813894","https://openalex.org/W1541235420","https://openalex.org/W1543773936","https://openalex.org/W1584021897","https://openalex.org/W1599679506","https://openalex.org/W1665603416","https://openalex.org/W1794032006","https://openalex.org/W1815546356","https://openalex.org/W1965247733","https://openalex.org/W1966786968","https://openalex.org/W1972689866","https://openalex.org/W1975924111","https://openalex.org/W1979622547","https://openalex.org/W1980299018","https://openalex.org/W1981342084","https://openalex.org/W1981509058","https://openalex.org/W1983253191","https://openalex.org/W1987139333","https://openalex.org/W1988650678","https://openalex.org/W1994782227","https://openalex.org/W1996238087","https://openalex.org/W2000747473","https://openalex.org/W2000964393","https://openalex.org/W2006421614","https://openalex.org/W2007599192","https://openalex.org/W2018869913","https://openalex.org/W2022552842","https://openalex.org/W2023401038","https://openalex.org/W2032709463","https://openalex.org/W2033155729","https://openalex.org/W2034573931","https://openalex.org/W2036340026","https://openalex.org/W2041877620","https://openalex.org/W2044047680","https://openalex.org/W2049721980","https://openalex.org/W2050286105","https://openalex.org/W2054117348","https://openalex.org/W2054331129","https://openalex.org/W2054522148","https://openalex.org/W2055104941","https://openalex.org/W2055191397","https://openalex.org/W2058805572","https://openalex.org/W2062896692","https://openalex.org/W2063742961","https://openalex.org/W2068353202","https://openalex.org/W2070051528","https://openalex.org/W2071952037","https://openalex.org/W2075221560","https://openalex.org/W2076071863","https://openalex.org/W2076215478","https://openalex.org/W2077460182","https://openalex.org/W2079224194","https://openalex.org/W2081087784","https://openalex.org/W2083861085","https://openalex.org/W2083900262","https://openalex.org/W2091836504","https://openalex.org/W2093008677","https://openalex.org/W2095867585","https://openalex.org/W2096192437","https://openalex.org/W2096873549","https://openalex.org/W2096959582","https://openalex.org/W2097922773","https://openalex.org/W2098174226","https://openalex.org/W2098470704","https://openalex.org/W2100987592","https://openalex.org/W2102147393","https://openalex.org/W2104262114","https://openalex.org/W2105792118","https://openalex.org/W2107002447","https://openalex.org/W2108649763","https://openalex.org/W2114504176","https://openalex.org/W2115413658","https://openalex.org/W2115577355","https://openalex.org/W2116373379","https://openalex.org/W2120391797","https://openalex.org/W2120783296","https://openalex.org/W2121365413","https://openalex.org/W2123080676","https://openalex.org/W2124855356","https://openalex.org/W2127057035","https://openalex.org/W2131088968","https://openalex.org/W2133036743","https://openalex.org/W2134440848","https://openalex.org/W2139735472","https://openalex.org/W2139915240","https://openalex.org/W2141408320","https://openalex.org/W2142926390","https://openalex.org/W2146436369","https://openalex.org/W2146856779","https://openalex.org/W2147256329","https://openalex.org/W2147776446","https://openalex.org/W2149118757","https://openalex.org/W2149769193","https://openalex.org/W2152045787","https://openalex.org/W2153515666","https://openalex.org/W2154412571","https://openalex.org/W2154431984","https://openalex.org/W2154537630","https://openalex.org/W2158057347","https://openalex.org/W2163069781","https://openalex.org/W2163730989","https://openalex.org/W2165253681","https://openalex.org/W2171111703","https://openalex.org/W2915607458","https://openalex.org/W4244423099","https://openalex.org/W6659356011","https://openalex.org/W6678987472"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"RegulonDB":[0,55],"provides":[1],"curated":[2],"information":[3],"on":[4],"the":[5,24,39,85,108,137,146],"transcriptional":[6],"regulatory":[7],"network":[8],"of":[9,26,41,61,87,110,121,136,162,177],"Escherichia":[10,62],"coli":[11],"and":[12,17,71,94,114,133,156],"contains":[13],"both":[14],"experimental":[15],"data":[16,100,123,163,180],"computationally":[18],"predicted":[19],"objects.":[20],"To":[21,97],"account":[22],"for":[23,38,107,124,130],"heterogeneity":[25],"these":[27,99],"data,":[28],"we":[29,103],"introduced":[30],"in":[31],"version":[32],"6.0,":[33],"a":[34,171,187,192],"two-tier":[35,183],"rating":[36,184],"system":[37,185,189],"strength":[40],"evidence,":[42,89],"classifying":[43],"evidence":[44,144,169],"as":[45],"either":[46],"'weak'":[47],"or":[48],"'strong'":[49],"(Gama-Castro,S.,":[50],"Jimenez-Jacinto,V.,":[51],"Peralta-Gil,M.":[52],"et":[53],"al.":[54],"(Version":[56],"6.0):":[57],"gene":[58],"regulation":[59],"model":[60],"Coli":[63],"K-12":[64],"beyond":[65],"transcription,":[66],"active":[67],"(experimental)":[68],"annotated":[69],"promoters":[70],"textpresso":[72],"navigation.":[73],"Nucleic":[74],"Acids":[75],"Res.,":[76],"2008;36:D120-D124.).":[77],"We":[78],"now":[79],"add":[80],"to":[81,148,159,170,186],"our":[82,182],"classification":[83,86],"scheme":[84],"high-throughput":[88],"including":[90],"chromatin":[91],"immunoprecipitation":[92],"(ChIP)":[93],"RNA-seq":[95],"technologies.":[96],"integrate":[98],"into":[101],"RegulonDB,":[102],"present":[104],"two":[105],"strategies":[106],"evaluation":[109],"confidence,":[111],"statistical":[112,154],"validation":[113,118,155],"independent":[115,143],"cross-validation.":[116],"Statistical":[117],"involves":[119],"verification":[120],"ChIP":[122],"transcription":[125],"factor-binding":[126],"sites,":[127],"using":[128],"tools":[129],"motif":[131],"discovery":[132],"quality":[134],"assessment":[135],"discovered":[138],"matrices.":[139],"Independent":[140],"cross-validation":[141,157,176],"combines":[142],"with":[145],"intention":[147],"mutually":[149],"exclude":[150],"false":[151],"positives.":[152],"Both":[153],"allow":[158],"upgrade":[160],"subsets":[161],"that":[164],"are":[165],"supported":[166],"by":[167,190],"weak":[168],"higher":[172],"confidence":[173,179,194],"level.":[174],"Likewise,":[175],"strong":[178],"extends":[181],"three-tier":[188],"introducing":[191],"third":[193],"score":[195],"'confirmed'.":[196],"Database":[197],"URL:":[198],"http://regulondb.ccg.unam.mx/":[199]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
