{"id":"https://openalex.org/W2100644624","doi":"https://doi.org/10.1093/database/bas044","title":"The eFIP system for text mining of protein interaction networks of phosphorylated proteins","display_name":"The eFIP system for text mining of protein interaction networks of phosphorylated proteins","publication_year":2012,"publication_date":"2012-12-05","ids":{"openalex":"https://openalex.org/W2100644624","doi":"https://doi.org/10.1093/database/bas044","mag":"2100644624","pmid":"https://pubmed.ncbi.nlm.nih.gov/23221174"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas044/1205789/bas044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas044/1205789/bas044.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019996064","display_name":"Catalina O. Tudor","orcid":"https://orcid.org/0009-0002-0420-7589"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"C. O. Tudor","raw_affiliation_strings":["Department of Computer and Information Sciences, University of Delaware, Newark, USA","Department of Computer and Information Sciences, University of Delaware, Newark, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"Department of Computer and Information Sciences, University of Delaware, Newark, USA#TAB#","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001355963","display_name":"Cecilia N. Arighi","orcid":"https://orcid.org/0000-0002-0803-4817"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. N. Arighi","raw_affiliation_strings":["Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100434825","display_name":"Qing Wang","orcid":"https://orcid.org/0000-0002-3560-5195"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Q. Wang","raw_affiliation_strings":["Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053761444","display_name":"Cathy Wu","orcid":"https://orcid.org/0000-0001-6379-8601"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. H. Wu","raw_affiliation_strings":["Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Vijay-Shanker","raw_affiliation_strings":["Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]},{"raw_affiliation_string":"1Department of Computer and Information Sciences and 2Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5019996064"],"corresponding_institution_ids":["https://openalex.org/I86501945"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.1451,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.87501205,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2012","issue":"0","first_page":"bas044","last_page":"bas044"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9613000154495239,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.530741274356842},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.4340285658836365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.396109014749527},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3883264660835266},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37057948112487793},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.31652936339378357},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1845548450946808},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16542121767997742}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.530741274356842},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.4340285658836365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.396109014749527},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3883264660835266},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37057948112487793},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.31652936339378357},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1845548450946808},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16542121767997742}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010750","descriptor_name":"Phosphoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051025","descriptor_name":"bcl-Associated Death Protein","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas044/1205789/bas044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23221174","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23221174","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3514748","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3514748","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas044/1205789/bas044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7900000214576721,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1331145985","display_name":null,"funder_award_id":"R01GM080646","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5870083451","display_name":"ABI Development: Integrative Bioinformatics for Knowledge Discovery of PTM Networks","funder_award_id":"1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8806795173","display_name":null,"funder_award_id":"ABI-1062520","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100644624.pdf","grobid_xml":"https://content.openalex.org/works/W2100644624.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W53390990","https://openalex.org/W192665053","https://openalex.org/W1527781663","https://openalex.org/W1529842856","https://openalex.org/W1538616452","https://openalex.org/W1558318887","https://openalex.org/W1784773894","https://openalex.org/W1959755538","https://openalex.org/W1986579413","https://openalex.org/W2018385240","https://openalex.org/W2021934182","https://openalex.org/W2061231608","https://openalex.org/W2061478295","https://openalex.org/W2064030835","https://openalex.org/W2075027317","https://openalex.org/W2101386052","https://openalex.org/W2104965688","https://openalex.org/W2108706252","https://openalex.org/W2116040937","https://openalex.org/W2122496897","https://openalex.org/W2126690563","https://openalex.org/W2127194753","https://openalex.org/W2129267433","https://openalex.org/W2139939204","https://openalex.org/W2142321231","https://openalex.org/W2152869996","https://openalex.org/W2157870551","https://openalex.org/W2165371346","https://openalex.org/W2166057395","https://openalex.org/W2169250301","https://openalex.org/W2404602200","https://openalex.org/W2408260152","https://openalex.org/W2916138694","https://openalex.org/W3151715093","https://openalex.org/W4294214797"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W2062208111","https://openalex.org/W1976181487","https://openalex.org/W1986764834"],"abstract_inverted_index":{"Protein":[0,138,174],"phosphorylation":[1,65,93,111,143],"is":[2,45],"a":[3,17,95,145,201,217,223,289,317],"central":[4],"regulatory":[5],"mechanism":[6],"in":[7,11,216,225],"signal":[8],"transduction":[9],"involved":[10],"most":[12],"biological":[13],"processes.":[14],"Phosphorylation":[15,76,139],"of":[16,25,40,75,94,101,110,142,172,204,234,242,248,258,264,270,284,297,307,316],"protein":[18,66,97],"may":[19],"lead":[20],"to":[21,88,148,177,295],"activation":[22],"or":[23,190,192],"repression":[24],"its":[26],"activity,":[27],"alternative":[28],"subcellular":[29],"location":[30],"and":[31,53,105,129,154,197,209,250,260,268],"interaction":[32,54],"with":[33,51,57,99,206],"different":[34],"binding":[35],"partners.":[36],"Extracting":[37,72,121],"this":[38],"type":[39],"information":[41,245],"from":[42,64],"scientific":[43],"literature":[44],"critical":[46],"for":[47,61,108,126,137,140,158,293],"connecting":[48],"phosphorylated":[49,152,181,314],"proteins":[50,153],"kinases":[52],"partners,":[55],"along":[56],"their":[58],"functional":[59],"outcomes,":[60],"knowledge":[62,179],"discovery":[63],"networks.":[67],"We":[68],"have":[69],"developed":[70,119],"the":[71,113,169,173,226,232,271,279,285,298,305],"Functional":[73],"Impact":[74],"(eFIP)":[77],"text":[78,162],"mining":[79,163],"system,":[80],"which":[81,212],"combines":[82],"several":[83],"natural":[84],"language":[85],"processing":[86],"techniques":[87],"find":[89],"relevant":[90,309],"abstracts":[91,205],"mentioning":[92],"given":[96,318],"together":[98],"indications":[100],"protein-protein":[102],"interactions":[103],"(PPIs)":[104],"potential":[106],"evidences":[107],"impact":[109,156],"on":[112,238,311],"PPIs.":[114],"eFIP":[115,184,235,272,286,302],"integrates":[116],"our":[117],"previously":[118],"tools,":[120],"Gene":[122],"Related":[123],"ABstracts":[124],"(eGRAB)":[125],"document":[127,239,251],"retrieval":[128,240],"name":[130],"disambiguation,":[131],"Rule-based":[132],"LIterature":[133],"Mining":[134,230],"System":[135],"(RLIMS-P)":[136],"extraction":[141,246],"information,":[144],"PPI":[146,312],"module":[147,157],"detect":[149],"PPIs":[150],"involving":[151,313],"an":[155],"relation":[159],"extraction.":[160],"The":[161,183,266,282],"system":[164],"has":[165],"been":[166],"integrated":[167],"into":[168],"curation":[170,299],"workflow":[171],"Ontology":[175],"(PRO)":[176],"capture":[178],"about":[180],"proteins.":[182],"web":[185,273],"interface":[186,274,287],"accepts":[187],"gene/protein":[188],"names":[189],"identifiers,":[191],"PubMed":[193],"identifiers":[194],"as":[195,200],"input,":[196],"displays":[198],"results":[199],"ranked":[202],"list":[203],"sentence":[207],"evidence":[208],"summary":[210],"table,":[211],"can":[213],"be":[214],"exported":[215],"spreadsheet":[218],"upon":[219],"result":[220],"validation.":[221],"As":[222],"participant":[224],"BioCreative-2012":[227],"Interactive":[228],"Text":[229],"track,":[231],"performance":[233],"was":[236],"evaluated":[237,277],"(F-measures":[241,247],"78-100%),":[243],"sentence-level":[244],"70-80%)":[249],"ranking":[252],"(normalized":[253],"discounted":[254],"cumulative":[255],"gain":[256],"measures":[257],"93-100%":[259],"mean":[261],"average":[262],"precision":[263],"0.86).":[265],"utility":[267],"usability":[269],"were":[275],"also":[276],"during":[278],"BioCreative":[280],"Workshop.":[281],"use":[283],"provided":[288],"significant":[290],"speed-up":[291],"(\u223c2.5-fold)":[292],"time":[294],"completion":[296],"task.":[300],"Additionally,":[301],"significantly":[303],"simplifies":[304],"task":[306],"finding":[308],"articles":[310],"forms":[315],"protein.":[319]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
