{"id":"https://openalex.org/W2097456924","doi":"https://doi.org/10.1093/database/bas038","title":"Developing a biocuration workflow for AgBase, a non-model organism database","display_name":"Developing a biocuration workflow for AgBase, a non-model organism database","publication_year":2012,"publication_date":"2012-11-17","ids":{"openalex":"https://openalex.org/W2097456924","doi":"https://doi.org/10.1093/database/bas038","mag":"2097456924","pmid":"https://pubmed.ncbi.nlm.nih.gov/23160411"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas038","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas038/1203012/bas038.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas038/1203012/bas038.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054178670","display_name":"Lakshmi Pillai","orcid":"https://orcid.org/0000-0002-6570-2041"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L. Pillai","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, USA","Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, USA","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035053812","display_name":"Philippe Chouvarine","orcid":"https://orcid.org/0000-0003-0563-315X"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Chouvarine","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019996064","display_name":"Catalina O. Tudor","orcid":"https://orcid.org/0009-0002-0420-7589"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. O. Tudor","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004246605","display_name":"Carl J. Schmidt","orcid":"https://orcid.org/0000-0002-8386-4781"},"institutions":[{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. J. Schmidt","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027009667","display_name":"K. Vijay\u2010Shanker","orcid":"https://orcid.org/0000-0003-0958-3073"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"K. Vijay-Shanker","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089552380","display_name":"Fiona McCarthy","orcid":"https://orcid.org/0000-0003-2175-5464"},"institutions":[{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I99041443","display_name":"Mississippi State University","ror":"https://ror.org/0432jq872","country_code":"US","type":"education","lineage":["https://openalex.org/I4210141039","https://openalex.org/I99041443"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. M. McCarthy","raw_affiliation_strings":["Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762,","Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762,","Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762,","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762,","institution_ids":["https://openalex.org/I99041443"]},{"raw_affiliation_string":"Department of Basic Sciences, College of Veterinary Medicine, Mississippi State University, MS 39762, 2Institute of Genomics, Biocomputing and Biotechnology, High Performance Computing Collaboratory, Mississippi State University, MS 39762, 3Department of Computer and Information Sciences, University of Delaware, Newark, DE and 4Department of Animal and Food Sciences, University of Delaware, Newark, DE, USA","institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5089552380"],"corresponding_institution_ids":["https://openalex.org/I86501945","https://openalex.org/I99041443"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.5374,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.66123181,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2012","issue":"0","first_page":"bas038","last_page":"bas038"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9387999773025513,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9223999977111816,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7696563005447388},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6567752361297607},{"id":"https://openalex.org/keywords/gene-nomenclature","display_name":"Gene nomenclature","score":0.6397048234939575},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5882131457328796},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5494382977485657},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4621383249759674},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4546005427837372},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4242698848247528},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4211677014827728},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3633287250995636},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3394099175930023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24996894598007202},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.22986358404159546},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1504746973514557},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1440160572528839}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7696563005447388},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6567752361297607},{"id":"https://openalex.org/C62177273","wikidata":"https://www.wikidata.org/wiki/Q5531556","display_name":"Gene nomenclature","level":4,"score":0.6397048234939575},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5882131457328796},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5494382977485657},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4621383249759674},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4546005427837372},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4242698848247528},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4211677014827728},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3633287250995636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3394099175930023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24996894598007202},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22986358404159546},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1504746973514557},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1440160572528839},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.0},{"id":"https://openalex.org/C514705636","wikidata":"https://www.wikidata.org/wiki/Q863247","display_name":"Nomenclature","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000383","descriptor_name":"Agriculture","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010506","descriptor_name":"Periodicals as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas038","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas038/1203012/bas038.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23160411","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23160411","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2499642","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3500517","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas038","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas038","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas038/1203012/bas038.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G4880958206","display_name":null,"funder_award_id":"GM07111084","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7572980005","display_name":null,"funder_award_id":"2011-67015-30332","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332605","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097456924.pdf","grobid_xml":"https://content.openalex.org/works/W2097456924.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2018925823","https://openalex.org/W2075027317","https://openalex.org/W2097898123","https://openalex.org/W2128119041","https://openalex.org/W2168340032"],"related_works":["https://openalex.org/W2059565715","https://openalex.org/W2901823680","https://openalex.org/W2009940763","https://openalex.org/W2946410450","https://openalex.org/W4361192415","https://openalex.org/W2126804125","https://openalex.org/W2162782320","https://openalex.org/W4386637333","https://openalex.org/W2137318037","https://openalex.org/W2127546476"],"abstract_inverted_index":{"AgBase":[0,110,169,272],"provides":[1],"annotation":[2,53,73,99,277,285],"for":[3,46,64,74,100,124,175],"agricultural":[4,21,185,287],"gene":[5,34,57,62,70,101,126,195,208,238,288],"products":[6,63,102],"using":[7],"the":[8,56,68,105,141,207,263],"Gene":[9],"Ontology":[10],"(GO)":[11],"and":[12,71,103,140,143,197,228],"Plant":[13],"Ontology,":[14],"as":[15,77,257],"appropriate.":[16],"Unlike":[17],"model":[18],"organism":[19],"species,":[20],"species":[22,186],"have":[23,189,267],"a":[24,130,160,165,215,237],"body":[25],"of":[26,51,206,286],"literature":[27,45,174],"that":[28,60,134,221,235,266],"does":[29],"not":[30,188,223],"just":[31],"focus":[32],"on":[33,179],"function;":[35],"to":[36,43,85,88,108,153,171,199,218,225,232,245,262,279],"improve":[37],"efficiency,":[38],"we":[39],"use":[40],"text":[41],"mining":[42],"identify":[44,173],"curation.":[47],"The":[48,113,241,271],"first":[49],"component":[50],"our":[52,89,246,281],"interface":[54,59,91,107],"is":[55,104,129,230,243],"prioritization":[58],"ranks":[61],"annotation.":[65,270],"Biocurators":[66],"select":[67],"top-ranked":[69],"mark":[72],"these":[75],"genes":[76],"'in":[78],"progress'":[79],"or":[80,164],"'completed';":[81],"links":[82],"enable":[83],"biocurators":[84,170,259],"move":[86],"directly":[87],"biocuration":[90],"(BI).":[92],"Our":[93],"BI":[94,114,242,273],"includes":[95],"all":[96,194],"current":[97],"GO":[98,154,161,181,269,295],"main":[106],"add/modify":[109],"curation":[111,177],"data.":[112],"also":[115,260,274],"displays":[116],"Extracting":[117],"Genic":[118],"Information":[119],"from":[120,283],"Text":[121],"(eGIFT)":[122],"results":[123],"each":[125],"product.":[127],"eGIFT":[128,192,213],"web-based,":[131],"text-mining":[132],"tool":[133],"associates":[135],"ranked,":[136],"informative":[137],"terms":[138],"(iTerms)":[139],"articles":[142,201],"sentences":[144],"containing":[145],"them,":[146],"with":[147,202],"genes.":[148,203],"Moreover,":[149],"iTerms":[150],"are":[151,254],"linked":[152,244],"terms,":[155],"where":[156,250],"they":[157],"match":[158],"either":[159],"term":[162],"name":[163],"synonym.":[166],"This":[167],"enables":[168],"rapidly":[172],"further":[176],"based":[178],"possible":[180],"terms.":[182],"Because":[183],"most":[184],"do":[187,222],"standardized":[190],"literature,":[191],"searches":[193],"names":[196,209],"synonyms":[198],"associate":[200],"As":[204],"many":[205],"can":[210],"be":[211],"ambiguous,":[212],"applies":[214],"disambiguation":[216],"step":[217],"remove":[219,233],"matches":[220],"correspond":[224],"this":[226],"gene,":[227],"filtering":[229],"applied":[231],"abstracts":[234],"mention":[236],"in":[239,301],"passing.":[240],"Journal":[247],"Database":[248,303],"(JDB)":[249],"corresponding":[251],"journal":[252],"citations":[253,265],"stored.":[255],"Just":[256],"importantly,":[258],"add":[261],"JDB":[264],"no":[268],"supports":[275],"bulk":[276],"upload":[278],"facilitate":[280],"Inferred":[282],"electronic":[284],"products.":[289],"All":[290],"annotations":[291],"must":[292],"pass":[293],"standard":[294],"Consortium":[296],"quality":[297],"checking":[298],"before":[299],"release":[300],"AgBase.":[302],"URL:":[304],"http://www.agbase.msstate.edu/.":[305]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
