{"id":"https://openalex.org/W2105481534","doi":"https://doi.org/10.1093/database/bas037","title":"Collaborative biocuration--text-mining development task for document prioritization for curation","display_name":"Collaborative biocuration--text-mining development task for document prioritization for curation","publication_year":2012,"publication_date":"2012-11-22","ids":{"openalex":"https://openalex.org/W2105481534","doi":"https://doi.org/10.1093/database/bas037","mag":"2105481534","pmid":"https://pubmed.ncbi.nlm.nih.gov/23180769"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas037/1202655/bas037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas037/1202655/bas037.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076813284","display_name":"Thomas C. Wiegers","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"T. C. Wiegers","raw_affiliation_strings":["Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA. tcwieger@ncsu.edu","Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA. tcwieger@ncsu.edu","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064334598","display_name":"Allan Peter Davis","orcid":"https://orcid.org/0000-0002-5741-7128"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. P. Davis","raw_affiliation_strings":["Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102941229","display_name":"Carolyn Mattingly","orcid":"https://orcid.org/0000-0002-2146-9436"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. J. Mattingly","raw_affiliation_strings":["Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5076813284"],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.0207,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.92096383,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2012","issue":"0","first_page":"bas037","last_page":"bas037"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9114000201225281,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.680755078792572},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6633114218711853},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.6610498428344727},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6306626796722412},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5817632675170898},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5480657815933228},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3559550344944},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.1377471685409546},{"id":"https://openalex.org/keywords/process-management","display_name":"Process management","score":0.1315036416053772},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11898928880691528}],"concepts":[{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.680755078792572},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6633114218711853},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.6610498428344727},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6306626796722412},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5817632675170898},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5480657815933228},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3559550344944},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.1377471685409546},{"id":"https://openalex.org/C195094911","wikidata":"https://www.wikidata.org/wiki/Q14167904","display_name":"Process management","level":1,"score":0.1315036416053772},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11898928880691528},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043922","descriptor_name":"Toxicogenetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas037/1202655/bas037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:23180769","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23180769","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2501801","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3504477","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas037","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas037","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas037/1202655/bas037.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105481534.pdf","grobid_xml":"https://content.openalex.org/works/W2105481534.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W139876133","https://openalex.org/W1527781663","https://openalex.org/W1550258693","https://openalex.org/W2037140704","https://openalex.org/W2040610660","https://openalex.org/W2107005506","https://openalex.org/W2107580398","https://openalex.org/W2117243134","https://openalex.org/W2127008962","https://openalex.org/W2127239015","https://openalex.org/W2131687506","https://openalex.org/W2136640051","https://openalex.org/W2137937634","https://openalex.org/W2145362441","https://openalex.org/W2149151184","https://openalex.org/W2158743996","https://openalex.org/W2159065781","https://openalex.org/W2165671627","https://openalex.org/W2169918010","https://openalex.org/W2918064359"],"related_works":["https://openalex.org/W2506292322","https://openalex.org/W4283209547","https://openalex.org/W4367627632","https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4306317641","https://openalex.org/W1488337274","https://openalex.org/W2216178707","https://openalex.org/W3095602079","https://openalex.org/W4287611188"],"abstract_inverted_index":{"The":[0,28],"Critical":[1],"Assessment":[2],"of":[3,44,112,123,136,154,219,225],"Information":[4],"Extraction":[5],"systems":[6,23,67,79,138],"in":[7,47,92,127],"Biology":[8],"(BioCreAtIvE)":[9],"challenge":[10,221],"evaluation":[11],"is":[12],"a":[13,93,193,216,223],"community-wide":[14],"effort":[15],"for":[16,24,87,170],"evaluating":[17],"text":[18,62],"mining":[19],"and":[20,61,84,89,98,110,145,173,179,204,222],"information":[21],"extraction":[22],"the":[25,104,131,134,152,182,220,226],"biological":[26],"domain.":[27],"'BioCreative":[29],"Workshop":[30],"2012'":[31],"subcommittee":[32],"identified":[33],"three":[34],"areas,":[35],"or":[36,78],"tracks,":[37],"that":[38,80],"comprised":[39],"independent,":[40],"but":[41],"complementary":[42],"aspects":[43],"data":[45,117],"curation":[46,57,88],"which":[48,115],"they":[49],"sought":[50],"community":[51],"input:":[52],"literature":[53],"triage":[54,83,132],"(Track":[55,59,68],"I);":[56],"workflow":[58],"II)":[60],"mining/natural":[63],"language":[64],"processing":[65],"(NLP)":[66],"III).":[69],"Track":[70,128],"I":[71],"participants":[72],"were":[73,101,118,176,199],"invited":[74],"to":[75],"develop":[76],"tools":[77],"would":[81],"effectively":[82],"prioritize":[85],"articles":[86],"present":[90,215],"results":[91],"prototype":[94,194],"web":[95,195],"interface.":[96],"Training":[97],"test":[99],"datasets":[100],"derived":[102],"from":[103,114],"Comparative":[105],"Toxicogenomics":[106],"Database":[107],"(CTD;":[108],"http://ctdbase.org)":[109],"consisted":[111],"manuscripts":[113],"chemical-gene-disease":[116],"manually":[119],"curated.":[120],"A":[121],"total":[122],"seven":[124],"groups":[125],"participated":[126],"I.":[129],"For":[130],"component,":[133],"effectiveness":[135,153],"participant":[137],"was":[139,158,186],"measured":[140,160],"by":[141,206],"aggregate":[142],"gene,":[143,171],"disease":[144,172],"chemical":[146,174],"'named-entity":[147],"recognition'":[148],"(NER)":[149],"across":[150],"articles;":[151],"'information":[155],"retrieval'":[156],"(IR)":[157],"also":[159,191],"based":[161,201],"on":[162,202],"'mean":[163],"average":[164],"precision'":[165],"(MAP).":[166],"Top":[167],"recall":[168],"scores":[169],"NER":[175],"49,":[177],"65":[178],"82%,":[180],"respectively;":[181],"top":[183],"MAP":[184],"score":[185],"80%.":[187],"Each":[188],"participating":[189],"group":[190],"developed":[192],"interface;":[196],"these":[197],"interfaces":[198],"evaluated":[200],"functionality":[203],"ease-of-use":[205],"CTD's":[207],"biocuration":[208],"project":[209],"manager.":[210],"In":[211],"this":[212],"article,":[213],"we":[214],"detailed":[217],"description":[218],"summary":[224],"results.":[227]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":5}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
