{"id":"https://openalex.org/W2116429329","doi":"https://doi.org/10.1093/database/bas002","title":"The gene-specific codon counting database: a genome-based catalog of one-, two-, three-, four- and five-codon combinations present in Saccharomyces cerevisiae genes","display_name":"The gene-specific codon counting database: a genome-based catalog of one-, two-, three-, four- and five-codon combinations present in Saccharomyces cerevisiae genes","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2116429329","doi":"https://doi.org/10.1093/database/bas002","mag":"2116429329","pmid":"https://pubmed.ncbi.nlm.nih.gov/22323063"},"language":"en","primary_location":{"id":"doi:10.1093/database/bas002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas002/16728577/bas002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas002/16728577/bas002.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045881813","display_name":"Sudheer Tumu","orcid":null},"institutions":[{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sudheer Tumu","raw_affiliation_strings":["Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025256873","display_name":"Ashish Patil","orcid":"https://orcid.org/0000-0003-3633-2077"},"institutions":[{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]},{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashish Patil","raw_affiliation_strings":["Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]},{"raw_affiliation_string":"1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I392282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073333545","display_name":"William L. Towns","orcid":null},"institutions":[{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Towns","raw_affiliation_strings":["Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]},{"raw_affiliation_string":"1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I392282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074772165","display_name":"Madhu Dyavaiah","orcid":"https://orcid.org/0000-0001-7804-9048"},"institutions":[{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madhu Dyavaiah","raw_affiliation_strings":["Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]},{"raw_affiliation_string":"1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I392282"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072756190","display_name":"Thomas J. Begley","orcid":"https://orcid.org/0000-0002-5641-7644"},"institutions":[{"id":"https://openalex.org/I392282","display_name":"University at Albany, State University of New York","ror":"https://ror.org/012zs8222","country_code":"US","type":"education","lineage":["https://openalex.org/I392282"]},{"id":"https://openalex.org/I113508548","display_name":"Albany State University","ror":"https://ror.org/01vme4277","country_code":"US","type":"education","lineage":["https://openalex.org/I113508548"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J. Begley","raw_affiliation_strings":["Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"]},{"raw_affiliation_string":"1Department of Computer Science, 2Cancer Research Center, University at Albany, 3RNA Institute and 4College of Nanoscale Science and Engineering, University at Albany, State University of New York, Albany, NY 12222, USA","institution_ids":["https://openalex.org/I392282"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5045881813"],"corresponding_institution_ids":["https://openalex.org/I113508548","https://openalex.org/I392282"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.3447,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.80065307,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2012","issue":null,"first_page":"bas002","last_page":"bas002"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"Codon usage bias","score":0.7777304649353027},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.7393651008605957},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.650807797908783},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6278072595596313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5737084746360779},{"id":"https://openalex.org/keywords/start-codon","display_name":"Start codon","score":0.4907270669937134},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4587763249874115},{"id":"https://openalex.org/keywords/stop-codon","display_name":"Stop codon","score":0.4460184574127197},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3411170244216919},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15320700407028198},{"id":"https://openalex.org/keywords/nucleotide","display_name":"Nucleotide","score":0.14197391271591187}],"concepts":[{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.7777304649353027},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.7393651008605957},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.650807797908783},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6278072595596313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5737084746360779},{"id":"https://openalex.org/C176990463","wikidata":"https://www.wikidata.org/wiki/Q1854186","display_name":"Start codon","level":4,"score":0.4907270669937134},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4587763249874115},{"id":"https://openalex.org/C20580545","wikidata":"https://www.wikidata.org/wiki/Q28354","display_name":"Stop codon","level":3,"score":0.4460184574127197},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3411170244216919},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15320700407028198},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.14197391271591187}],"mesh":[{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bas002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas002/16728577/bas002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:22323063","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22323063","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3275765","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3275765","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bas002","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bas002","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bas002/16728577/bas002.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116429329.pdf","grobid_xml":"https://content.openalex.org/works/W2116429329.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1887202616","https://openalex.org/W1902720477","https://openalex.org/W2018590530","https://openalex.org/W2028528516","https://openalex.org/W2047166826","https://openalex.org/W2069304279","https://openalex.org/W2074014487","https://openalex.org/W2078556683","https://openalex.org/W2082541384","https://openalex.org/W2102988942","https://openalex.org/W2103031848","https://openalex.org/W2109327803","https://openalex.org/W2117310188","https://openalex.org/W2117815774","https://openalex.org/W2121648552","https://openalex.org/W2125846492","https://openalex.org/W2131459517","https://openalex.org/W2133140073","https://openalex.org/W2141677147","https://openalex.org/W2150297520","https://openalex.org/W2156536014","https://openalex.org/W2156701707","https://openalex.org/W2160257303","https://openalex.org/W2161838765","https://openalex.org/W2168316093","https://openalex.org/W4233751608","https://openalex.org/W6639617460","https://openalex.org/W6639868157","https://openalex.org/W6682464342"],"related_works":["https://openalex.org/W2132060660","https://openalex.org/W1793475955","https://openalex.org/W2371354124","https://openalex.org/W4297376290","https://openalex.org/W2163703477","https://openalex.org/W2143024320","https://openalex.org/W4220881471","https://openalex.org/W2092868778","https://openalex.org/W2116541947","https://openalex.org/W1976709328"],"abstract_inverted_index":{"A":[0],"codon":[1,61,85,96,115,128,149,160,199],"consists":[2],"of":[3,14,27,34,77,136,186,208],"three":[4],"nucleotides":[5],"and":[6,43,55,69,83,89,99,118,121,134,189,198,204],"functions":[7],"during":[8],"translation":[9],"to":[10,30,73,102,125,173,193],"dictate":[11],"the":[12,25,32,75],"insertion":[13],"a":[15,20,95,183],"specific":[16,67,78,132,152,159],"amino":[17],"acid":[18],"in":[19,24,87,131,151,167,202],"growing":[21],"peptide":[22],"or,":[23],"case":[26],"stop":[28],"codons,":[29],"specify":[31],"completion":[33],"protein":[35],"synthesis.":[36],"There":[37],"are":[38,45,165],"64":[39],"possible":[40],"single":[41],"codons":[42],"there":[44],"4096":[46],"double,":[47,80],"262":[48],"144":[49],"triple,":[50,81],"16":[51],"777":[52],"216":[53],"quadruple":[54,82],"1":[56],"073":[57],"741":[58],"824":[59],"quintuple":[60,84],"combinations":[62,86,161],"available":[63],"for":[64],"use":[65,76],"by":[66],"genes":[68,88,133,168],"genomes.":[70],"In":[71],"order":[72],"evaluate":[74],"single,":[79],"gene":[90],"networks,":[91],"we":[92,145],"have":[93,109,122,146,155],"developed":[94,111,140],"counting":[97],"tool":[98],"employed":[100],"it":[101],"analyze":[103],"5780":[104],"Saccharomyces":[105],"cerevisiae":[106],"genes.":[107,137,153,209],"We":[108,154],"also":[110,156],"visualization":[112],"approaches,":[113],"including":[114],"painting,":[116],"combination":[117],"bar":[119],"graphs,":[120],"used":[123,192],"them":[124],"identify":[126,194],"distinct":[127],"usage":[129,163,200],"patterns":[130,164,201],"groups":[135,207],"Using":[138],"our":[139],"Gene-Specific":[141],"Codon":[142],"Counting":[143],"Database,":[144],"identified":[147],"extreme":[148],"runs":[150,197],"demonstrated":[157],"that":[158],"or":[162,175],"over-represented":[166],"whose":[169],"corresponding":[170],"proteins":[171],"belong":[172],"ribosome":[174],"translation-associated":[176],"biological":[177],"processes.":[178],"Our":[179],"resulting":[180],"database":[181],"provides":[182],"mineable":[184],"list":[185],"multi-codon":[187],"data":[188],"can":[190],"be":[191],"unique":[195],"sequence":[196],"individual":[203],"functionally":[205],"linked":[206]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
