{"id":"https://openalex.org/W2135383920","doi":"https://doi.org/10.1093/database/bar060","title":"Building a biomedical semantic network in Wikipedia with Semantic Wiki Links","display_name":"Building a biomedical semantic network in Wikipedia with Semantic Wiki Links","publication_year":2012,"publication_date":"2012-03-20","ids":{"openalex":"https://openalex.org/W2135383920","doi":"https://doi.org/10.1093/database/bar060","mag":"2135383920","pmid":"https://pubmed.ncbi.nlm.nih.gov/22434829"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar060/1185898/bar060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar060/1185898/bar060.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087499135","display_name":"Benjamin M. Good","orcid":"https://orcid.org/0000-0002-7334-7852"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"B. M. Good","raw_affiliation_strings":["The Scripps Research Institute, La Jolla, CA 92037, USA","The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden"],"affiliations":[{"raw_affiliation_string":"The Scripps Research Institute, La Jolla, CA 92037, USA","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002280838","display_name":"Erik Clarke","orcid":"https://orcid.org/0000-0002-2031-8791"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. L. Clarke","raw_affiliation_strings":["The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden"],"affiliations":[{"raw_affiliation_string":"The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058823865","display_name":"Salvatore Loguercio","orcid":"https://orcid.org/0000-0002-7544-2992"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Loguercio","raw_affiliation_strings":["The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden"],"affiliations":[{"raw_affiliation_string":"The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045408201","display_name":"Andrew I. Su","orcid":"https://orcid.org/0000-0002-9859-4104"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. I. Su","raw_affiliation_strings":["The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden"],"affiliations":[{"raw_affiliation_string":"The Scripps Research Institute, La Jolla, CA 92037, USA and 2Technische Universit\u00e4t Dresden, Biotechnology Center, Tatzberg 47/49, 01307 Dresden","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087499135"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.7418,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.91730866,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2012","issue":"0","first_page":"bar060","last_page":"bar060"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12478","display_name":"Wikis in Education and Collaboration","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/3315","display_name":"Communication"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8366464376449585},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6374996900558472},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6241205930709839},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5857707262039185},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5473686456680298},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.4457879960536957},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.41599082946777344},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.4145280122756958},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.12501809000968933},{"id":"https://openalex.org/keywords/library-science","display_name":"Library science","score":0.07731407880783081}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8366464376449585},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6374996900558472},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6241205930709839},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5857707262039185},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5473686456680298},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.4457879960536957},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.41599082946777344},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.4145280122756958},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12501809000968933},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.07731407880783081},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bar060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar060/1185898/bar060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:22434829","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22434829","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3308151","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3308151","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar060","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar060","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar060/1185898/bar060.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G4917471619","display_name":null,"funder_award_id":"GM089820","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135383920.pdf","grobid_xml":"https://content.openalex.org/works/W2135383920.grobid-xml"},"referenced_works_count":13,"referenced_works":["https://openalex.org/W1989626479","https://openalex.org/W2028042751","https://openalex.org/W2050028106","https://openalex.org/W2091940856","https://openalex.org/W2098374884","https://openalex.org/W2098478473","https://openalex.org/W2116824254","https://openalex.org/W2119826980","https://openalex.org/W2130682154","https://openalex.org/W2153225416","https://openalex.org/W2611471614","https://openalex.org/W2912580958","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2348562996","https://openalex.org/W4387776128","https://openalex.org/W4244686159","https://openalex.org/W3159833212","https://openalex.org/W3010321750","https://openalex.org/W3011873497","https://openalex.org/W3007654203","https://openalex.org/W2186132238","https://openalex.org/W3169620976","https://openalex.org/W2201477785"],"abstract_inverted_index":{"Wikipedia":[0,36,105,118,151,170],"is":[1,42,56,137,155],"increasingly":[2],"used":[3],"as":[4],"a":[5,39,53,72,75,78,100,138,156],"platform":[6],"for":[7],"collaborative":[8],"data":[9],"curation,":[10],"but":[11],"its":[12,21,163],"current":[13,117],"technical":[14],"implementation":[15],"has":[16],"significant":[17],"limitations":[18],"that":[19,50,55,103,143,161],"hinder":[20],"use":[22],"in":[23,35,52,68,113],"biocuration":[24],"applications.":[25],"Specifically,":[26],"while":[27],"editors":[28,106],"can":[29,144],"easily":[30],"link":[31],"between":[32,74],"two":[33,124],"articles":[34,168],"to":[37,45,59,63,70,84,107,177],"indicate":[38,46],"relationship,":[40],"there":[41],"no":[43],"way":[44,54],"the":[47,60,86,95,114,129,166,173],"nature":[48],"of":[49,116,131],"relationship":[51,73],"computationally":[57],"accessible":[58],"system":[61,160],"or":[62,91],"external":[64],"developers.":[65],"For":[66],"example,":[67],"addition":[69],"noting":[71],"gene":[76,158],"and":[77,171],"disease,":[79],"it":[80],"would":[81],"be":[82,145],"useful":[83],"differentiate":[85],"cases":[87],"where":[88],"genetic":[89],"mutation":[90],"altered":[92],"expression":[93],"causes":[94],"disease.":[96],"Here,":[97],"we":[98,122],"introduce":[99],"straightforward":[101],"method":[102],"allows":[104],"embed":[108],"computable":[109],"semantic":[110,175],"relations":[111],"directly":[112],"context":[115],"articles.":[119,152],"In":[120],"addition,":[121],"demonstrate":[123],"novel":[125],"applications":[126],"enabled":[127],"by":[128],"presence":[130],"these":[132],"new":[133,174],"relationships.":[134],"The":[135,153],"first":[136],"dynamically":[139],"generated":[140],"information":[141],"box":[142],"rendered":[146],"on":[147,169],"all":[148],"semantically":[149],"enhanced":[150],"second":[154],"prototype":[157],"annotation":[159],"draws":[162],"content":[164],"from":[165],"gene-centric":[167],"exposes":[172],"relationships":[176],"enable":[178],"previously":[179],"impossible,":[180],"user-defined":[181],"queries.":[182],"DATABASE":[183],"URL:":[184],"http://en.wikipedia.org/wiki/Portal:Gene_Wiki.":[185]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
