{"id":"https://openalex.org/W2135278768","doi":"https://doi.org/10.1093/database/bar055","title":"hUbiquitome: a database of experimentally verified ubiquitination cascades in humans","display_name":"hUbiquitome: a database of experimentally verified ubiquitination cascades in humans","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2135278768","doi":"https://doi.org/10.1093/database/bar055","mag":"2135278768","pmid":"https://pubmed.ncbi.nlm.nih.gov/22134927"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar055","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar055/14095007/bar055.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar055/14095007/bar055.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010841796","display_name":"Yipeng Du","orcid":"https://orcid.org/0000-0002-0000-623X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yipeng Du","raw_affiliation_strings":["Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210130930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005257391","display_name":"Nanfang Xu","orcid":"https://orcid.org/0000-0001-5888-293X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Nanfang Xu","raw_affiliation_strings":["Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210130930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085122646","display_name":"Ming L\u00fc","orcid":"https://orcid.org/0000-0003-3768-7267"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Lu","raw_affiliation_strings":["Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210130930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100416470","display_name":"Tingting Li","orcid":"https://orcid.org/0000-0002-5011-0174"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210130930","display_name":"Peking University First Hospital","ror":"https://ror.org/02z1vqm45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210130930"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tingting Li","raw_affiliation_strings":["Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, 2Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Department of Biochemistry and Molecular Biology, Peking University Health Science Center, Beijing 100191, 3Peking University First Hospital, Beijing 100034 and 4Institute of Systems Biomedicine, Peking University Health Science Center, Beijing 100191, China","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210130930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100416470"],"corresponding_institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210130930"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.9734,"has_fulltext":true,"cited_by_count":36,"citation_normalized_percentile":{"value":0.74291334,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2011","issue":null,"first_page":"bar055","last_page":"bar055"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10587","display_name":"Autophagy in Disease and Therapy","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.9024016857147217},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.6183693408966064},{"id":"https://openalex.org/keywords/ubiquitin-protein-ligases","display_name":"Ubiquitin-Protein Ligases","score":0.5717885494232178},{"id":"https://openalex.org/keywords/ubiquitin-conjugating-enzyme","display_name":"Ubiquitin-conjugating enzyme","score":0.5460625886917114},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45227038860321045},{"id":"https://openalex.org/keywords/substrate-specificity","display_name":"Substrate specificity","score":0.4121329188346863},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3994981646537781},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37867942452430725},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.37405112385749817},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.35555264353752136},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.35506874322891235},{"id":"https://openalex.org/keywords/ubiquitin-ligase","display_name":"Ubiquitin ligase","score":0.3275279998779297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.29263678193092346}],"concepts":[{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.9024016857147217},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.6183693408966064},{"id":"https://openalex.org/C2908868211","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin-Protein Ligases","level":5,"score":0.5717885494232178},{"id":"https://openalex.org/C182561583","wikidata":"https://www.wikidata.org/wiki/Q7876535","display_name":"Ubiquitin-conjugating enzyme","level":5,"score":0.5460625886917114},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45227038860321045},{"id":"https://openalex.org/C2994592520","wikidata":"https://www.wikidata.org/wiki/Q5090496","display_name":"Substrate specificity","level":3,"score":0.4121329188346863},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3994981646537781},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37867942452430725},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.37405112385749817},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.35555264353752136},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.35506874322891235},{"id":"https://openalex.org/C134459356","wikidata":"https://www.wikidata.org/wiki/Q4274835","display_name":"Ubiquitin ligase","level":4,"score":0.3275279998779297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29263678193092346}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025801","descriptor_name":"Ubiquitin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D044767","descriptor_name":"Ubiquitin-Protein Ligases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051736","descriptor_name":"Proto-Oncogene Proteins c-mdm2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051736","descriptor_name":"Proto-Oncogene Proteins c-mdm2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051736","descriptor_name":"Proto-Oncogene Proteins c-mdm2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054875","descriptor_name":"Ubiquitination","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bar055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar055","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar055/14095007/bar055.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:22134927","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22134927","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2237431","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3228279","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar055","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar055","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar055/14095007/bar055.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3663427279","display_name":null,"funder_award_id":"2011CBA01104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4066629913","display_name":null,"funder_award_id":"2011CBA01104","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G746773566","display_name":null,"funder_award_id":"60905014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7974305244","display_name":"Myostatin\u8c03\u63a7\u7684miRNAs\u5728\u9aa8\u9abc\u808c\u53d1\u80b2\u4e2d\u7684\u529f\u80fd\u53ca\u8868\u8fbe\u8c03\u63a7\u7684\u5206\u5b50\u673a\u5236","funder_award_id":"31030041","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135278768.pdf","grobid_xml":"https://content.openalex.org/works/W2135278768.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W206736697","https://openalex.org/W1590553747","https://openalex.org/W1832030339","https://openalex.org/W1964021682","https://openalex.org/W1978720506","https://openalex.org/W2007805002","https://openalex.org/W2025250061","https://openalex.org/W2033055043","https://openalex.org/W2048263228","https://openalex.org/W2061156149","https://openalex.org/W2067343115","https://openalex.org/W2068650008","https://openalex.org/W2088724822","https://openalex.org/W2094920743","https://openalex.org/W2097343327","https://openalex.org/W2101785060","https://openalex.org/W2123939104","https://openalex.org/W2124748470","https://openalex.org/W2139536874","https://openalex.org/W2144114582","https://openalex.org/W2150925238","https://openalex.org/W2158217645","https://openalex.org/W2166440816","https://openalex.org/W2166987747","https://openalex.org/W2168591052","https://openalex.org/W6678194764"],"related_works":["https://openalex.org/W1987982805","https://openalex.org/W3212514911","https://openalex.org/W4214895574","https://openalex.org/W295190513","https://openalex.org/W2054919679","https://openalex.org/W2348681936","https://openalex.org/W2169532909","https://openalex.org/W2263320115","https://openalex.org/W3162394609","https://openalex.org/W4287181432"],"abstract_inverted_index":{"Protein":[0],"ubiquitination":[1,28,50,84,96,204],"is":[2,62,72,89,191],"an":[3],"evolutionarily":[4],"conserved":[5],"and":[6,21,33,55,86,122,202],"functionally":[7],"diverse":[8],"post-translational":[9],"modification":[10],"achieved":[11],"through":[12],"the":[13,56,66,78,90,140,177,180,185,192,212],"sequential":[14],"action":[15],"of":[16,26,36,48,59,80,94,130,135,176,184,188,214],"E1-activating":[17],"enzymes,":[18,112],"E2-conjugating":[19],"enzymes":[20,85,206],"E3":[22,114],"ligases.":[23],"A":[24],"summary":[25,47],"validated":[27,199],"substrates":[29,38,51,131,147,163],"have":[30,39],"been":[31,40],"presented":[32],"a":[34,45,74],"prediction":[35],"new":[37],"conducted":[41],"in":[42,101,159,170,211],"yeast.":[43],"However,":[44],"systematic":[46],"human":[49,83,95],"containing":[52],"experimental":[53],"evidence":[54],"enzymatic":[57],"cascade":[58,205],"each":[60],"substrate":[61,120],"not":[63],"available.":[64],"In":[65],"present":[67],"study,":[68],"hUbiquitome":[69,88,99,190],"web":[70],"resource":[71,76],"introduced,":[73],"public":[75],"for":[77],"retrieval":[79],"experimentally":[81,198],"verified":[82],"substrates.":[87],"first":[91,193],"comprehensive":[92],"database":[93,194],"cascades.":[97],"Currently,":[98],"has":[100],"its":[102],"repertoire":[103],"curated":[104],"data":[105,178],"comprising":[106],"1":[107],"E1":[108],"enzyme,":[109],"12":[110],"E2":[111],"138":[113],"ligases":[115],"or":[116],"complexes,":[117],"279":[118],"different":[119,133,186],"proteins":[121,201],"17":[123],"deubiquitination":[124],"enzyme":[125],"terms.":[126],"The":[127,143],"biological":[128,181],"functions":[129],"from":[132],"kinds":[134,187],"E3s":[136,155,167],"were":[137],"analyzed":[138],"using":[139],"collected":[141],"data.":[142],"findings":[144],"show":[145],"that":[146],"ubiquitinated":[148,164,200],"by":[149,165],"RING":[150],"(Really":[151],"Interesting":[152],"New":[153],"Gene)":[154],"are":[156,168],"enriched":[157,169],"most":[158],"apoptosis-related":[160],"processes,":[161],"whereas":[162],"other":[166],"gene":[171],"expression-associated":[172],"processes.":[173],"An":[174],"analysis":[175],"demonstrates":[179],"process":[182],"preferences":[183],"E3s.":[189],"to":[195],"systematically":[196],"collect":[197],"related":[203],"which":[207],"might":[208],"be":[209],"helpful":[210],"field":[213],"ubiquitination-modification":[215],"research.":[216],"Database":[217],"URL:":[218],"http://202.38.126.151/hmdd/hubi/":[219]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
