{"id":"https://openalex.org/W2139254860","doi":"https://doi.org/10.1093/database/bar052","title":"INOH: ontology-based highly structured database of signal transduction pathways","display_name":"INOH: ontology-based highly structured database of signal transduction pathways","publication_year":2011,"publication_date":"2011-11-26","ids":{"openalex":"https://openalex.org/W2139254860","doi":"https://doi.org/10.1093/database/bar052","mag":"2139254860","pmid":"https://pubmed.ncbi.nlm.nih.gov/22120663"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar052/1272350/bar052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar052/1272350/bar052.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027211308","display_name":"Sh\u016bichi Yamamoto","orcid":"https://orcid.org/0000-0002-6756-9141"},"institutions":[{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I1319490839","https://openalex.org/I4210086780"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"S. Yamamoto","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan","institution_ids":["https://openalex.org/I4210086780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062030034","display_name":"Nami Sakai","orcid":"https://orcid.org/0000-0002-3297-4497"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"N. Sakai","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013603016","display_name":"Harukazu Nakamura","orcid":null},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Nakamura","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038580395","display_name":"Hirohiko Fukagawa","orcid":"https://orcid.org/0000-0001-5531-6510"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"H. Fukagawa","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044584230","display_name":"Ken Fukuda","orcid":"https://orcid.org/0000-0001-7366-1094"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"K. Fukuda","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027081795","display_name":"Toshiyuki Takagi","orcid":"https://orcid.org/0000-0003-1283-4320"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"T. Takagi","raw_affiliation_strings":["Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Bioinformatics Research and Development, Japan Science and Technology Agency, Kashiwa, Japan, 2 Information and Mathematical Science Laboratory, Inc., Bunkyo, Japan, 3 INTEC Inc., Koto, Japan, 4 Intelligent Information Infrastructure Division, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan and 5 Graduate School of Frontier Sciences, University of Tokyo, Kashiwa, Japan","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5027081795"],"corresponding_institution_ids":["https://openalex.org/I73613424"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.365,"has_fulltext":true,"cited_by_count":80,"citation_normalized_percentile":{"value":0.60276792,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"2011","issue":"0","first_page":"bar052","last_page":"bar052"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6405515074729919},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5457940697669983},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4400941729545593},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.43668749928474426},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4118674397468567}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6405515074729919},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5457940697669983},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4400941729545593},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.43668749928474426},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4118674397468567},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014982","descriptor_name":"Xenopus laevis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bar052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar052/1272350/bar052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:22120663","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22120663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3225078","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3225078","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar052","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar052","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar052/1272350/bar052.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2139254860.pdf","grobid_xml":"https://content.openalex.org/works/W2139254860.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1745113633","https://openalex.org/W1871852719","https://openalex.org/W1969325859","https://openalex.org/W1969709265","https://openalex.org/W2002635898","https://openalex.org/W2010502047","https://openalex.org/W2017138237","https://openalex.org/W2035933413","https://openalex.org/W2058605101","https://openalex.org/W2096704019","https://openalex.org/W2096766502","https://openalex.org/W2099007946","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2123171788","https://openalex.org/W2131660156","https://openalex.org/W2132992030","https://openalex.org/W2143969914","https://openalex.org/W2150908245","https://openalex.org/W2151638049","https://openalex.org/W2158439765","https://openalex.org/W2159675211","https://openalex.org/W2160540739","https://openalex.org/W2163500926","https://openalex.org/W2171437346","https://openalex.org/W2171599819","https://openalex.org/W2180180358","https://openalex.org/W2612240612"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"The":[0,94],"Integrating":[1],"Network":[2],"Objects":[3],"with":[4,57],"Hierarchies":[5],"(INOH)":[6],"database":[7,14,38,68,96],"is":[8,69,97],"a":[9,47,52,58,72,88,100,110],"highly":[10],"structured,":[11],"manually":[12],"curated":[13],"of":[15,74,87],"signal":[16,118],"transduction":[17,119],"pathways":[18],"including":[19],"Mammalia,":[20],"Xenopus":[21],"laevis,":[22],"Drosophila":[23],"melanogaster,":[24],"Caenorhabditis":[25],"elegans":[26],"and":[27,42,61,91,116,120,129,139],"canonical.":[28],"Since":[29],"most":[30],"pathway":[31,54,63,123],"knowledge":[32,45],"resides":[33],"in":[34,65,136],"scientific":[35],"articles,":[36],"the":[37,66,81,85],"focuses":[39],"on":[40],"curating":[41],"encoding":[43],"textual":[44],"into":[46],"machine-processable":[48],"form.":[49],"We":[50],"use":[51],"hierarchical":[53,92],"representation":[55],"model":[56],"compound":[59,89],"graph,":[60],"every":[62],"component":[64],"INOH":[67,95,114,137],"annotated":[70],"by":[71],"set":[73],"uniquely":[75],"developed":[76,80],"ontologies.":[77,93],"Finally,":[78],"we":[79],"Similarity":[82],"Search":[83],"using":[84],"combination":[86],"graph":[90],"to":[98,108],"be":[99],"good":[101],"resource":[102],"for":[103],"many":[104],"users":[105],"who":[106],"want":[107],"analyze":[109],"large":[111],"protein":[112,131],"network.":[113],"ontologies":[115],"73":[117],"29":[121],"metabolic":[122],"diagrams":[124],"(including":[125],"over":[126],"6155":[127],"interactions":[128],"3395":[130],"entities)":[132],"are":[133],"freely":[134],"available":[135],"XML":[138],"BioPAX":[140],"formats.":[141],"Database":[142],"URL:":[143],"http://www.inoh.org/":[144]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
