{"id":"https://openalex.org/W1967204795","doi":"https://doi.org/10.1093/database/bar044","title":"Tripal: a construction toolkit for online genome databases","display_name":"Tripal: a construction toolkit for online genome databases","publication_year":2011,"publication_date":"2011-09-29","ids":{"openalex":"https://openalex.org/W1967204795","doi":"https://doi.org/10.1093/database/bar044","mag":"1967204795","pmid":"https://pubmed.ncbi.nlm.nih.gov/21959868"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar044/1269207/bar044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar044/1269207/bar044.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015114586","display_name":"Stephen Ficklin","orcid":"https://orcid.org/0000-0001-9138-6292"},"institutions":[{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. P. Ficklin","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA","Department of Horticulture and Landscape Architecture; Washington State University; Pullman; WA; 99164; USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA 99164, USA","institution_ids":["https://openalex.org/I72951846"]},{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture; Washington State University; Pullman; WA; 99164; USA","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112297610","display_name":"L.-A. Sanderson","orcid":null},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"L.-A. Sanderson","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113727607","display_name":"Chun-Huai Cheng","orcid":null},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"C.-H. Cheng","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021572745","display_name":"Margaret Staton","orcid":"https://orcid.org/0000-0003-2971-9353"},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"M. E. Staton","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078750276","display_name":"T. Lee","orcid":null},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"T. Lee","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043959080","display_name":"Il-Hyung Cho","orcid":null},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"I.-H. Cho","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090460787","display_name":"Seolkyoung Jung","orcid":"https://orcid.org/0009-0004-7679-5919"},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"S. Jung","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011124979","display_name":"Kirstin E. Bett","orcid":"https://orcid.org/0000-0001-7959-6959"},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"K. E. Bett","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045435393","display_name":"Dorrie Main","orcid":"https://orcid.org/0000-0002-1162-2724"},"institutions":[{"id":"https://openalex.org/I27920566","display_name":"Saginaw Valley State University","ror":"https://ror.org/01y7m0485","country_code":"US","type":"education","lineage":["https://openalex.org/I27920566"]},{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]},{"id":"https://openalex.org/I72951846","display_name":"Washington State University","ror":"https://ror.org/05dk0ce17","country_code":"US","type":"education","lineage":["https://openalex.org/I72951846"]},{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["CA","US"],"is_corresponding":false,"raw_author_name":"D. Main","raw_affiliation_strings":["Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","Washington State University, Pullman, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture and Landscape Architecture, Washington State University, Pullman, WA, USA 99164, 2Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada S7N 5B5, 3Clemson University Genomics Institute (CUGI), Clemson University, Clemson, SC, USA 29634 and 4Department of Computer Science, Saginaw Valley State University, University Center, MI, USA 48710","institution_ids":["https://openalex.org/I8078737","https://openalex.org/I72951846","https://openalex.org/I27920566","https://openalex.org/I32625721"]},{"raw_affiliation_string":"Washington State University, Pullman, United States","institution_ids":["https://openalex.org/I72951846"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":2.2621,"has_fulltext":true,"cited_by_count":75,"citation_normalized_percentile":{"value":0.87714804,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"2011","issue":"0","first_page":"bar044","last_page":"bar044"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.697466254234314},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.657477617263794},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5511941909790039},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.513480007648468},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.48990052938461304},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4751431941986084},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.43108758330345154},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.13874167203903198},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10322001576423645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.697466254234314},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.657477617263794},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5511941909790039},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.513480007648468},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.48990052938461304},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4751431941986084},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.43108758330345154},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.13874167203903198},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10322001576423645},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bar044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar044/1269207/bar044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:21959868","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21959868","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:europepmc.org:2269598","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3263599","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar044","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar044","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar044/1269207/bar044.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6600000262260437,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3012499982","display_name":null,"funder_award_id":"BRE1010","funder_id":"https://openalex.org/F4320314113","funder_display_name":"Saskatchewan Pulse Growers"},{"id":"https://openalex.org/G5626871004","display_name":"Genomic tool development for the Fagaceae","funder_award_id":"0605135","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320309106","display_name":"Clemson University","ror":"https://ror.org/037s24f05"},{"id":"https://openalex.org/F4320314113","display_name":"Saskatchewan Pulse Growers","ror":"https://ror.org/05ff35k33"},{"id":"https://openalex.org/F4320332605","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044"},{"id":"https://openalex.org/F4320334595","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1967204795.pdf","grobid_xml":"https://content.openalex.org/works/W1967204795.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W21744265","https://openalex.org/W26485700","https://openalex.org/W119536216","https://openalex.org/W1490553060","https://openalex.org/W1574182225","https://openalex.org/W1784029848","https://openalex.org/W1955942836","https://openalex.org/W1993025082","https://openalex.org/W2001338440","https://openalex.org/W2022351903","https://openalex.org/W2022366078","https://openalex.org/W2038251528","https://openalex.org/W2065735621","https://openalex.org/W2082909190","https://openalex.org/W2100895966","https://openalex.org/W2103017472","https://openalex.org/W2112466127","https://openalex.org/W2123060905","https://openalex.org/W2129246904","https://openalex.org/W2133579817","https://openalex.org/W2136482257","https://openalex.org/W2145477956","https://openalex.org/W2148317584","https://openalex.org/W2150934173","https://openalex.org/W2151397621","https://openalex.org/W2157302781","https://openalex.org/W2158714788","https://openalex.org/W2164085656","https://openalex.org/W2164154943","https://openalex.org/W2166699767","https://openalex.org/W2167155938","https://openalex.org/W2168103533","https://openalex.org/W2402793346"],"related_works":["https://openalex.org/W4312158493","https://openalex.org/W2033835987","https://openalex.org/W4248750016","https://openalex.org/W4205092877","https://openalex.org/W1824784554","https://openalex.org/W3141940143","https://openalex.org/W1561860948","https://openalex.org/W1979295894","https://openalex.org/W2267080198","https://openalex.org/W2904651995"],"abstract_inverted_index":{"As":[0],"the":[1,14,32,42,71,105,112,198,201],"availability,":[2],"affordability":[3],"and":[4,8,23,94,139,150,160,162,197,215,226],"magnitude":[5],"of":[6,26,73,83,91,109,129,152,158,174,191,200,212],"genomics":[7],"genetics":[9],"research":[10,38,59],"increases":[11],"so":[12],"does":[13],"need":[15],"to":[16,20,47,111,188],"provide":[17],"online":[18,29],"access":[19],"resulting":[21],"data":[22,113,125,130],"analyses.":[24],"Availability":[25],"a":[27,50,75,85,120,178],"tailored":[28],"database":[30,51,87],"is":[31,186,203,217,222],"desire":[33],"for":[34,89,131],"many":[35],"investigators":[36],"or":[37,60],"communities;":[39],"however,":[40],"managing":[41],"Information":[43],"Technology":[44],"infrastructure":[45],"needed":[46],"create":[48],"such":[49],"can":[52],"be":[53],"an":[54,101,169,223],"undesired":[55],"distraction":[56],"from":[57],"primary":[58],"potentially":[61],"cost":[62],"prohibitive.":[63],"Tripal":[64,99,118,145,175,221],"provides":[65,100,119,172],"simplified":[66],"site":[67,195,202],"development":[68],"by":[69,194],"merging":[70],"power":[72],"Drupal,":[74],"popular":[76,179],"web":[77],"Content":[78],"Management":[79],"System":[80],"with":[81,176],"that":[82,103,147,171],"Chado,":[84],"community-derived":[86],"schema":[88],"storage":[90],"genomic,":[92],"genetic":[93],"other":[95],"related":[96],"biological":[97,135],"data.":[98],"interface":[102],"extends":[104],"content":[106,214],"management":[107],"features":[108],"Drupal":[110],"housed":[114],"in":[115],"Chado.":[116],"Furthermore,":[117],"web-based":[121,127],"Chado":[122],"installer,":[123],"genomic":[124,133],"loaders,":[126],"editing":[128],"organisms,":[132],"features,":[134],"libraries,":[136],"controlled":[137],"vocabularies":[138],"stock":[140],"collections.":[141],"Also":[142],"available":[143,187,228],"are":[144],"extensions":[146,193],"support":[148],"loading":[149],"visualizations":[151],"NCBI":[153],"BLAST,":[154],"InterPro,":[155],"Kyoto":[156],"Encyclopedia":[157],"Genes":[159],"Genomes":[161],"Gene":[163],"Ontology":[164],"analyses,":[165],"as":[166,168],"well":[167],"extension":[170],"integration":[173],"GBrowse,":[177],"GMOD":[180],"tool.":[181],"An":[182],"Application":[183],"Programming":[184],"Interface":[185],"allow":[189],"creation":[190],"custom":[192],"developers,":[196],"look-and-feel":[199],"completely":[204],"customizable":[205],"through":[206,219],"Drupal-based":[207],"PHP":[208],"template":[209],"files.":[210],"Addition":[211],"non-biological":[213],"user-management":[216],"afforded":[218],"Drupal.":[220],"open":[224],"source":[225],"freely":[227],"software":[229],"package":[230],"found":[231],"at":[232],"http://tripal.sourceforge.net.":[233]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
