{"id":"https://openalex.org/W2150263927","doi":"https://doi.org/10.1093/database/bar036","title":"ppiTrim: constructing non-redundant and up-to-date interactomes","display_name":"ppiTrim: constructing non-redundant and up-to-date interactomes","publication_year":2011,"publication_date":"2011-01-01","ids":{"openalex":"https://openalex.org/W2150263927","doi":"https://doi.org/10.1093/database/bar036","mag":"2150263927","pmid":"https://pubmed.ncbi.nlm.nih.gov/21873645"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar036","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar036/14094855/bar036.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar036/14094855/bar036.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088040720","display_name":"Aleksandar Stojmirovi\u0107","orcid":"https://orcid.org/0000-0003-0957-6893"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aleksandar Stojmirovi\u0107","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080970152","display_name":"Yi\u2010Kuo Yu","orcid":"https://orcid.org/0000-0002-6213-7665"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yi-Kuo Yu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5080970152"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.7982,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.72047922,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2011","issue":null,"first_page":"bar036","last_page":"bar036"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9781000018119812,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.8518044352531433},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7854568958282471},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7418636083602905},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6508333683013916},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.4539225101470947},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4177263081073761},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3302311301231384},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16778945922851562},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09438806772232056},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09255880117416382}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.8518044352531433},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7854568958282471},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7418636083602905},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6508333683013916},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.4539225101470947},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4177263081073761},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3302311301231384},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16778945922851562},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09438806772232056},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09255880117416382},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bar036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar036","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar036/14094855/bar036.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:21873645","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21873645","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:arXiv.org:1103.1402","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1103.1402","pdf_url":"https://arxiv.org/pdf/1103.1402","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:2166832","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3162744","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar036","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar036/14094855/bar036.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2150263927.pdf","grobid_xml":"https://content.openalex.org/works/W2150263927.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W1498834900","https://openalex.org/W1597415162","https://openalex.org/W1976937534","https://openalex.org/W2003516452","https://openalex.org/W2025868820","https://openalex.org/W2028133290","https://openalex.org/W2050721857","https://openalex.org/W2066232588","https://openalex.org/W2077997913","https://openalex.org/W2091602394","https://openalex.org/W2095867585","https://openalex.org/W2099131261","https://openalex.org/W2103017472","https://openalex.org/W2107580398","https://openalex.org/W2113142309","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117513900","https://openalex.org/W2122863289","https://openalex.org/W2125656519","https://openalex.org/W2130687290","https://openalex.org/W2135548107","https://openalex.org/W2144014661","https://openalex.org/W2148043260","https://openalex.org/W2150934340","https://openalex.org/W2152482800","https://openalex.org/W2152653671","https://openalex.org/W2158197251","https://openalex.org/W2158439765","https://openalex.org/W2159460045","https://openalex.org/W2159830506","https://openalex.org/W2161062388","https://openalex.org/W2162032011","https://openalex.org/W2165253681","https://openalex.org/W2166043581","https://openalex.org/W2167654789","https://openalex.org/W2408289238","https://openalex.org/W2772934464","https://openalex.org/W2915108429","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W4211208250","https://openalex.org/W4213007714","https://openalex.org/W4233437719","https://openalex.org/W4237381349","https://openalex.org/W6635887124","https://openalex.org/W6656765579","https://openalex.org/W6657364767","https://openalex.org/W6663414208","https://openalex.org/W6666997826","https://openalex.org/W6670231510","https://openalex.org/W6673175756","https://openalex.org/W6674786341","https://openalex.org/W6676058677","https://openalex.org/W6677003940","https://openalex.org/W6677194658","https://openalex.org/W6677315148","https://openalex.org/W6677521861","https://openalex.org/W6678624986","https://openalex.org/W6679248178","https://openalex.org/W6679930551","https://openalex.org/W6681683204","https://openalex.org/W6681879221","https://openalex.org/W6682487766","https://openalex.org/W6682673217","https://openalex.org/W6683431069","https://openalex.org/W6683523385","https://openalex.org/W6683554965","https://openalex.org/W6683614660","https://openalex.org/W6683805968","https://openalex.org/W6684281581","https://openalex.org/W6713790248","https://openalex.org/W6758954927","https://openalex.org/W6759277687","https://openalex.org/W6759562974","https://openalex.org/W7073800979"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W2964314049","https://openalex.org/W2022326234","https://openalex.org/W1531941329","https://openalex.org/W4388694323","https://openalex.org/W3215098729","https://openalex.org/W4243081378","https://openalex.org/W1979330259","https://openalex.org/W2622356054","https://openalex.org/W2804670115"],"abstract_inverted_index":{"Robust":[0],"advances":[1],"in":[2,109,113,230],"interactome":[3,55],"analysis":[4],"demand":[5],"comprehensive,":[6],"non-redundant":[7],"and":[8,125,203,239,249,275],"consistently":[9,220],"annotated":[10,221],"data":[11,222,271],"sets.":[12],"By":[13],"non-redundant,":[14,219],"we":[15,208,264,287],"mean":[16],"that":[17,87,214],"the":[18,52,62,65,77,89,135,182,254,267],"accounting":[19],"of":[20,49,64,79,196,224],"evidence":[21],"for":[22,56,251],"every":[23],"interaction":[24,174,253],"should":[25],"be":[26],"faithful:":[27],"each":[28,252],"independent":[29],"experimental":[30,67],"support":[31],"is":[32,178],"counted":[33],"exactly":[34],"once,":[35],"no":[36,38],"more,":[37],"less.":[39],"While":[40,277],"many":[41],"interactions":[42,95,153,165],"are":[43,88],"shared":[44],"among":[45,257,299],"public":[46],"repositories,":[47],"none":[48],"them":[50,162],"contains":[51],"complete":[53],"known":[54],"any":[57],"model":[58],"organism.":[59],"In":[60],"addition,":[61],"annotations":[63],"same":[66],"result":[68],"by":[69],"different":[70,258,285,296],"repositories":[71,99],"often":[72],"disagree.":[73],"This":[74],"brings":[75],"up":[76],"issue":[78,139],"which":[80],"annotation":[81,255,297],"to":[82,118,128,132,141,180,204,217,236],"keep":[83],"while":[84,159],"consolidating":[85],"evidences":[86],"same.":[90],"The":[91],"iRefIndex":[92,116,216],"database,":[93],"including":[94],"from":[96,122,187,295],"most":[97,281],"popular":[98],"with":[100,143,154,192],"a":[101,106,193,212],"standardized":[102],"protein":[103,144,184],"nomenclature,":[104],"represents":[105],"significant":[107],"advance":[108],"all":[110,120,234,241],"aspects,":[111],"especially":[112],"comprehensiveness.":[114],"However,":[115],"aims":[117],"maintain":[119],"information/annotation":[121],"original":[123],"sources":[124],"requires":[126],"users":[127],"perform":[129],"additional":[130],"processing":[131],"fully":[133],"achieve":[134,205],"aforementioned":[136],"goals.":[137],"Another":[138],"has":[140],"do":[142],"complexes.":[145],"Some":[146],"databases":[147],"represent":[148],"experimentally":[149],"observed":[150],"complexes":[151],"as":[152],"more":[155],"than":[156],"two":[157],"participants,":[158],"others":[160],"expand":[161],"into":[163],"binary":[164],"using":[166],"spoke":[167,188],"or":[168,189],"matrix":[169,190],"model.":[170],"To":[171,199],"avoid":[172],"untested":[173],"information":[175],"buildup,":[176],"it":[177],"preferable":[179],"replace":[181],"expanded":[183,247],"complexes,":[185,248],"either":[186],"models,":[191],"flat":[194],"list":[195],"complex":[197],"members.":[198],"address":[200],"these":[201],"issues":[202],"our":[206],"goals,":[207],"have":[209,265],"developed":[210],"ppiTrim,":[211],"script":[213,228],"processes":[215],"produce":[218],"sets":[223],"physical":[225],"interactions.":[226],"Our":[227],"proceeds":[229],"three":[231,268],"stages:":[232],"mapping":[233],"interactants":[235],"gene":[237],"identifiers":[238],"removing":[240],"undesired":[242],"raw":[243],"interactions,":[244],"deflating":[245],"potentially":[246],"reconciling":[250],"labels":[256],"source":[259],"databases.":[260],"As":[261],"an":[262],"illustration,":[263],"processed":[266],"largest":[269],"organismal":[270],"sets:":[272],"yeast,":[273],"human":[274],"fruitfly.":[276],"ppiTrim":[278],"can":[279],"resolve":[280],"apparent":[282],"conflicts":[283],"between":[284],"labelings,":[286],"also":[288],"discovered":[289],"some":[290],"unresolvable":[291],"disagreements":[292],"mostly":[293],"resulting":[294],"policies":[298],"repositories.":[300],"Database":[301],"URL:":[302],"http://www.ncbi.nlm.nih.gov/CBBresearch/Yu/downloads/ppiTrim.html.":[303]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
