{"id":"https://openalex.org/W2130253098","doi":"https://doi.org/10.1093/database/bar009","title":"UniProt Knowledgebase: a hub of integrated protein data","display_name":"UniProt Knowledgebase: a hub of integrated protein data","publication_year":2011,"publication_date":"2011-03-29","ids":{"openalex":"https://openalex.org/W2130253098","doi":"https://doi.org/10.1093/database/bar009","mag":"2130253098","pmid":"https://pubmed.ncbi.nlm.nih.gov/21447597"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar009","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar009/1257039/bar009.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar009/1257039/bar009.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004635493","display_name":"Michele Magrane","orcid":"https://orcid.org/0000-0003-3544-996X"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]},{"id":"https://openalex.org/I86501945","display_name":"University of Delaware","ror":"https://ror.org/01sbq1a82","country_code":"US","type":"education","lineage":["https://openalex.org/I86501945"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH","GB","US"],"is_corresponding":true,"raw_author_name":"M. Magrane","raw_affiliation_strings":["European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. magrane@ebi.ac.uk","European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 2Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland, 3Protein Information Resource, Georgetown University Medical Center, 3300 Whitehaven St. NW, Suite 1200, Washington, DC 20007","University of Delaware, 15 Innovation Way, Suite 205, Newark, DE 19711, USA"],"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK. magrane@ebi.ac.uk","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 2Swiss Institute of Bioinformatics, Centre Medical Universitaire, 1 rue Michel Servet, 1211 Geneva 4, Switzerland, 3Protein Information Resource, Georgetown University Medical Center, 3300 Whitehaven St. NW, Suite 1200, Washington, DC 20007","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I184565670","https://openalex.org/I87048295","https://openalex.org/I2799903593","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"University of Delaware, 15 Innovation Way, Suite 205, Newark, DE 19711, USA","institution_ids":["https://openalex.org/I86501945"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004635493"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1303153112","https://openalex.org/I184565670","https://openalex.org/I2799903593","https://openalex.org/I86501945","https://openalex.org/I87048295"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":65.4928,"has_fulltext":true,"cited_by_count":1495,"citation_normalized_percentile":{"value":0.99971582,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"2011","issue":"0","first_page":"bar009","last_page":"bar009"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9675511121749878},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7162542939186096},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5660545825958252},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45912253856658936},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.45604637265205383},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45026567578315735},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.08853590488433838},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07537788152694702}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9675511121749878},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7162542939186096},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5660545825958252},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45912253856658936},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.45604637265205383},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45026567578315735},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.08853590488433838},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07537788152694702},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/bar009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar009","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar009/1257039/bar009.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:21447597","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21447597","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1529752","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1529752/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION   (ARTN bar)     (2011)      ","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3070428","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3070428","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar009","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar009","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar009/1257039/bar009.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1178822109","display_name":"Linking Text Mining with Ontology and Systems Biology","funder_award_id":"0850319","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1331145985","display_name":null,"funder_award_id":"R01GM080646","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1867634862","display_name":null,"funder_award_id":"P20RR016472","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2618860244","display_name":null,"funder_award_id":"226073","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5143913891","display_name":null,"funder_award_id":"RR0164","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6401217413","display_name":null,"funder_award_id":"200754","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7257051450","display_name":"The Microme Project: A Knowledge-Based Bioinformatics Framework for Microbial Pathway Genomics","funder_award_id":"222886","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2130253098.pdf","grobid_xml":"https://content.openalex.org/works/W2130253098.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W159602724","https://openalex.org/W1236321187","https://openalex.org/W1837233678","https://openalex.org/W1981095206","https://openalex.org/W1981194976","https://openalex.org/W1985738984","https://openalex.org/W2000941677","https://openalex.org/W2040022355","https://openalex.org/W2047253404","https://openalex.org/W2051795211","https://openalex.org/W2053636710","https://openalex.org/W2054058144","https://openalex.org/W2072287929","https://openalex.org/W2081269341","https://openalex.org/W2096939566","https://openalex.org/W2102633320","https://openalex.org/W2103017472","https://openalex.org/W2106882534","https://openalex.org/W2108187446","https://openalex.org/W2113535342","https://openalex.org/W2116423958","https://openalex.org/W2125055259","https://openalex.org/W2126775187","https://openalex.org/W2128613007","https://openalex.org/W2132023322","https://openalex.org/W2132926880","https://openalex.org/W2144362290","https://openalex.org/W2150818376","https://openalex.org/W2153091158","https://openalex.org/W2158304452","https://openalex.org/W2158714788","https://openalex.org/W2163965551","https://openalex.org/W2164940334","https://openalex.org/W2171681733","https://openalex.org/W2740163983","https://openalex.org/W2914405292","https://openalex.org/W2915482286","https://openalex.org/W2917375902","https://openalex.org/W4213393525","https://openalex.org/W4249435950"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W24553703","https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2059359052","https://openalex.org/W2035528219","https://openalex.org/W2402478170","https://openalex.org/W2946410450","https://openalex.org/W2999847357","https://openalex.org/W2901823680"],"abstract_inverted_index":{"The":[0,84],"UniProt":[1,85],"Knowledgebase":[2],"(UniProtKB)":[3],"acts":[4],"as":[5],"a":[6,14,60,107],"central":[7],"hub":[8],"of":[9,17,62,81,109],"protein":[10,18],"knowledge":[11],"by":[12],"providing":[13],"unified":[15],"view":[16],"sequence":[19],"and":[20,24,91,97,99],"functional":[21],"information.":[22],"Manual":[23],"automatic":[25],"annotation":[26],"procedures":[27],"are":[28],"used":[29],"to":[30,34,40,48,71,77,89,111],"add":[31],"data":[32,55,63,94,101],"directly":[33],"the":[35,79],"database":[36],"while":[37],"extensive":[38],"cross-referencing":[39],"more":[41,53],"than":[42],"120":[43],"external":[44],"databases":[45],"provides":[46],"access":[47],"additional":[49],"relevant":[50],"information":[51,68],"in":[52,106],"specialized":[54],"collections.":[56],"UniProtKB":[57,100],"also":[58],"integrates":[59],"range":[61,108],"from":[64],"other":[65,115],"resources.":[66],"All":[67],"is":[69,87,102],"attributed":[70],"its":[72],"original":[73],"source,":[74],"allowing":[75],"users":[76],"trace":[78],"provenance":[80],"all":[82],"data.":[83],"Consortium":[86],"committed":[88],"using":[90],"promoting":[92],"common":[93],"exchange":[95],"formats":[96,110],"technologies,":[98],"made":[103],"freely":[104],"available":[105],"facilitate":[112],"integration":[113],"with":[114],"databases.":[116],"Database":[117],"URL:":[118],"http://www.uniprot.org/":[119]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":41},{"year":2023,"cited_by_count":38},{"year":2022,"cited_by_count":69},{"year":2021,"cited_by_count":73},{"year":2020,"cited_by_count":74},{"year":2019,"cited_by_count":78},{"year":2018,"cited_by_count":87},{"year":2017,"cited_by_count":136},{"year":2016,"cited_by_count":169},{"year":2015,"cited_by_count":203},{"year":2014,"cited_by_count":184},{"year":2013,"cited_by_count":168},{"year":2012,"cited_by_count":107}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
