{"id":"https://openalex.org/W2109809956","doi":"https://doi.org/10.1093/database/bar001","title":"FunSecKB: the Fungal Secretome KnowledgeBase","display_name":"FunSecKB: the Fungal Secretome KnowledgeBase","publication_year":2011,"publication_date":"2011-02-06","ids":{"openalex":"https://openalex.org/W2109809956","doi":"https://doi.org/10.1093/database/bar001","mag":"2109809956"},"language":"en","primary_location":{"id":"doi:10.1093/database/bar001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar001/1254134/bar001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar001/1254134/bar001.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112963950","display_name":"G. Lum","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116091","display_name":"Department of Physics, Mathematics and Informatics","ror":"https://ror.org/023sm4k53","country_code":"BY","type":"facility","lineage":["https://openalex.org/I151823869","https://openalex.org/I4210116091"]},{"id":"https://openalex.org/I161203489","display_name":"Youngstown State University","ror":"https://ror.org/038zf2n28","country_code":"US","type":"education","lineage":["https://openalex.org/I161203489"]}],"countries":["BY","US"],"is_corresponding":true,"raw_author_name":"G. Lum","raw_affiliation_strings":["Department of Computer Science and Information Systems and","Department of Computer Science and Information Systems and 2Department of Biological Sciences, Center for Applied Chemical Biology, Youngstown State University, Youngstown, OH 44555, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems and","institution_ids":["https://openalex.org/I4210116091"]},{"raw_affiliation_string":"Department of Computer Science and Information Systems and 2Department of Biological Sciences, Center for Applied Chemical Biology, Youngstown State University, Youngstown, OH 44555, USA","institution_ids":["https://openalex.org/I161203489"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042486252","display_name":"Xiang Jia Min","orcid":"https://orcid.org/0000-0001-7978-0596"},"institutions":[{"id":"https://openalex.org/I161203489","display_name":"Youngstown State University","ror":"https://ror.org/038zf2n28","country_code":"US","type":"education","lineage":["https://openalex.org/I161203489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"X. J. Min","raw_affiliation_strings":["Department of Computer Science and Information Systems and 2Department of Biological Sciences, Center for Applied Chemical Biology, Youngstown State University, Youngstown, OH 44555, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Information Systems and 2Department of Biological Sciences, Center for Applied Chemical Biology, Youngstown State University, Youngstown, OH 44555, USA","institution_ids":["https://openalex.org/I161203489"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5112963950"],"corresponding_institution_ids":["https://openalex.org/I161203489","https://openalex.org/I4210116091"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":4.9509,"has_fulltext":true,"cited_by_count":127,"citation_normalized_percentile":{"value":0.9631284,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"2011","issue":"0","first_page":"bar001","last_page":"bar001"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.9661957025527954},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.9512689113616943},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5643343925476074},{"id":"https://openalex.org/keywords/signal-peptide","display_name":"Signal peptide","score":0.47618475556373596},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.458331435918808},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.45638516545295715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42678603529930115},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.405556321144104},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.387335866689682},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3410387933254242},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3257511258125305},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29393863677978516},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2675359845161438},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2283095419406891},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.153324693441391},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.14447802305221558},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.12018585205078125}],"concepts":[{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.9661957025527954},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.9512689113616943},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5643343925476074},{"id":"https://openalex.org/C10858879","wikidata":"https://www.wikidata.org/wiki/Q899790","display_name":"Signal peptide","level":4,"score":0.47618475556373596},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.458331435918808},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.45638516545295715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42678603529930115},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.405556321144104},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.387335866689682},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3410387933254242},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3257511258125305},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29393863677978516},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2675359845161438},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2283095419406891},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.153324693441391},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.14447802305221558},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.12018585205078125}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/database/bar001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar001/1254134/bar001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2269605","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3263735","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bar001","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bar001","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bar001/1254134/bar001.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311616","display_name":"Youngstown State University","ror":"https://ror.org/038zf2n28"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109809956.pdf","grobid_xml":"https://content.openalex.org/works/W2109809956.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W56964673","https://openalex.org/W191495951","https://openalex.org/W206421451","https://openalex.org/W640148157","https://openalex.org/W1537641994","https://openalex.org/W1752086550","https://openalex.org/W1953382790","https://openalex.org/W1971147414","https://openalex.org/W1997876717","https://openalex.org/W2021901733","https://openalex.org/W2030903159","https://openalex.org/W2035333716","https://openalex.org/W2038605297","https://openalex.org/W2039971761","https://openalex.org/W2042420688","https://openalex.org/W2052902740","https://openalex.org/W2062498615","https://openalex.org/W2075968180","https://openalex.org/W2084309492","https://openalex.org/W2089047063","https://openalex.org/W2092921819","https://openalex.org/W2094725612","https://openalex.org/W2106087641","https://openalex.org/W2107903949","https://openalex.org/W2111086397","https://openalex.org/W2115933717","https://openalex.org/W2116054833","https://openalex.org/W2117658386","https://openalex.org/W2122091777","https://openalex.org/W2124088653","https://openalex.org/W2125079066","https://openalex.org/W2140158320","https://openalex.org/W2146923243","https://openalex.org/W2152458080","https://openalex.org/W2155632794","https://openalex.org/W2158173168","https://openalex.org/W2161732286","https://openalex.org/W2161746138","https://openalex.org/W2163176484","https://openalex.org/W2173897585","https://openalex.org/W2615284093"],"related_works":["https://openalex.org/W2068850418","https://openalex.org/W2058910748","https://openalex.org/W2107691364","https://openalex.org/W3109735703","https://openalex.org/W1984316389","https://openalex.org/W2140718072","https://openalex.org/W2989951885","https://openalex.org/W2947085902","https://openalex.org/W2031708534","https://openalex.org/W1972394537"],"abstract_inverted_index":{"The":[0,26,64],"Fungal":[1],"Secretome":[2],"KnowledgeBase":[3],"(FunSecKB)":[4],"provides":[5],"a":[6,32,91,162],"resource":[7,164],"of":[8,75,142,145,170],"secreted":[9,27,172],"fungal":[10,18,146,151,171],"proteins,":[11,54],"i.e.":[12],"secretomes,":[13],"identified":[14,30],"from":[15,153],"all":[16],"available":[17],"protein":[19],"data":[20,152],"in":[21,88],"the":[22,69,95,127,149,167],"NCBI":[23],"RefSeq":[24,105,154],"database.":[25],"proteins":[28],"were":[29,66,79,86],"using":[31,103],"well":[33],"evaluated":[34],"computational":[35],"protocol":[36],"which":[37],"includes":[38],"SignalP,":[39],"WolfPsort":[40],"and":[41,55,72,100,155],"Phobius":[42],"for":[43,51,57,165],"signal":[44],"peptide":[45],"or":[46,83,107,114],"subcellular":[47,76,143],"location":[48],"prediction,":[49],"TMHMM":[50],"identifying":[52,58],"membrane":[53],"PS-Scan":[56],"endoplasmic":[59],"reticulum":[60],"(ER)":[61],"target":[62],"proteins.":[63,147,173],"entries":[65],"mapped":[67],"to":[68,122,125,138],"UniProt":[70,110],"database":[71,96,128],"any":[73],"annotations":[74],"locations":[77,144],"that":[78],"either":[80],"manually":[81],"curated":[82],"computationally":[84],"predicted":[85],"included":[87],"FunSecKB.":[89],"Using":[90],"web-based":[92,157],"user":[93,133],"interface,":[94],"is":[97],"searchable,":[98],"browsable":[99],"downloadable":[101],"by":[102,115,129],"NCBI's":[104],"accession":[106,111],"gi":[108],"number,":[109,112],"keyword":[113],"species.":[116],"A":[117,132],"BLAST":[118],"utility":[119],"was":[120,136],"integrated":[121],"allow":[123],"users":[124],"query":[126],"sequence":[130],"similarity.":[131],"submission":[134],"tool":[135],"implemented":[137],"support":[139],"community":[140],"annotation":[141],"With":[148],"complete":[150],"associated":[156],"tools,":[158],"FunSecKB":[159],"will":[160],"be":[161],"valuable":[163],"exploring":[166],"potential":[168],"applications":[169]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":14}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}