{"id":"https://openalex.org/W2137726543","doi":"https://doi.org/10.1093/database/baq033","title":"Bookshelf: a simple curation system for the storage of biomolecular simulation data","display_name":"Bookshelf: a simple curation system for the storage of biomolecular simulation data","publication_year":2010,"publication_date":"2010-12-17","ids":{"openalex":"https://openalex.org/W2137726543","doi":"https://doi.org/10.1093/database/baq033","mag":"2137726543","pmid":"https://pubmed.ncbi.nlm.nih.gov/21169341"},"language":"en","primary_location":{"id":"doi:10.1093/database/baq033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq033","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq033/1140557/baq033.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq033/1140557/baq033.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008590939","display_name":"Shabana Vohra","orcid":"https://orcid.org/0000-0003-1995-3795"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"S. Vohra","raw_affiliation_strings":["Structural Bioinformatics and Computational Biochemistry, University of Oxford, South Parks Road, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and Computational Biochemistry, University of Oxford, South Parks Road, Oxford, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027490511","display_name":"Benjamin A. Hall","orcid":"https://orcid.org/0000-0003-0355-2946"},"institutions":[{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"B. A. Hall","raw_affiliation_strings":["Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","University of Southampton, Southampton, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940","https://openalex.org/I40120149"]},{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030971269","display_name":"Daniel A. Holdbrook","orcid":"https://orcid.org/0000-0002-8116-9208"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"D. A. Holdbrook","raw_affiliation_strings":["Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","University of Southampton, Southampton, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940","https://openalex.org/I40120149"]},{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079670006","display_name":"Syma Khalid","orcid":"https://orcid.org/0000-0002-3694-5044"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Khalid","raw_affiliation_strings":["Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","University of Southampton, Southampton, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940","https://openalex.org/I40120149"]},{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034236085","display_name":"Philip C. Biggin","orcid":"https://orcid.org/0000-0001-5100-8836"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I43439940","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543","country_code":"GB","type":"education","lineage":["https://openalex.org/I43439940"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P. C. Biggin","raw_affiliation_strings":["Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","University of Southampton, Southampton, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics and Computational Biochemistry, University of Oxford, 2Department of Biochemistry, Oxford Centre for Integrative Systems Biology, South Parks Road, Oxford. OX1 3QU and 3School of Chemistry, University of Southampton, Highfield, Southampton, SO17 1BJ, UK","institution_ids":["https://openalex.org/I43439940","https://openalex.org/I40120149"]},{"raw_affiliation_string":"University of Southampton, Southampton, United Kingdom","institution_ids":["https://openalex.org/I43439940"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008590939"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.3281,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60975751,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2010","issue":"0","first_page":"baq033","last_page":"baq033"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9883000254631042,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.792199969291687},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7376279830932617},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.6672626733779907},{"id":"https://openalex.org/keywords/information-storage","display_name":"Information storage","score":0.48117026686668396},{"id":"https://openalex.org/keywords/computer-data-storage","display_name":"Computer data storage","score":0.4535951018333435},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41952812671661377},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.35943663120269775},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3383257985115051},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3223890960216522},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1687329113483429}],"concepts":[{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.792199969291687},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7376279830932617},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.6672626733779907},{"id":"https://openalex.org/C2988424471","wikidata":"https://www.wikidata.org/wiki/Q193395","display_name":"Information storage","level":2,"score":0.48117026686668396},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.4535951018333435},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41952812671661377},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.35943663120269775},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3383257985115051},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3223890960216522},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1687329113483429},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/database/baq033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq033","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq033/1140557/baq033.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:21169341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21169341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:eprints.soton.ac.uk:179491","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/179491/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:1330466","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/1330466/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"   Database (Oxford) , 2010    baq033-.   (2010)      ","raw_type":"Article"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:b7f5e0ac-47f3-464b-90e4-cf36d35af988","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:b7f5e0ac-47f3-464b-90e4-cf36d35af988","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PubMed (http://www.ncbi.nlm.nih.gov/pubmed/)","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3004466","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3004466","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baq033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq033","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq033/1140557/baq033.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320240","display_name":"Research Councils UK","ror":"https://ror.org/00dq2kk65"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137726543.pdf","grobid_xml":"https://content.openalex.org/works/W2137726543.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W935801421","https://openalex.org/W1548991402","https://openalex.org/W1981021420","https://openalex.org/W1993184064","https://openalex.org/W2002128187","https://openalex.org/W2006705644","https://openalex.org/W2012533565","https://openalex.org/W2022288592","https://openalex.org/W2072311615","https://openalex.org/W2076301559","https://openalex.org/W2080985792","https://openalex.org/W2103815459","https://openalex.org/W2108507420","https://openalex.org/W2141132558","https://openalex.org/W2154484202","https://openalex.org/W2157804076","https://openalex.org/W2162166182","https://openalex.org/W2517795074","https://openalex.org/W2518624423"],"related_works":["https://openalex.org/W2386109432","https://openalex.org/W4280513114","https://openalex.org/W4220719101","https://openalex.org/W2531328309","https://openalex.org/W3192384512","https://openalex.org/W1981479248","https://openalex.org/W2378983974","https://openalex.org/W2381265898","https://openalex.org/W1994472360","https://openalex.org/W2072068291"],"abstract_inverted_index":{"Molecular":[0],"dynamics":[1],"simulations":[2],"can":[3,63],"now":[4],"routinely":[5],"generate":[6,19],"data":[7,21,32,52],"sets":[8],"of":[9,12,31,51,89,103,121,147,162,197,221,224],"several":[10],"hundreds":[11],"gigabytes":[13],"in":[14,39,58,84,97,151,180],"size.":[15],"The":[16,71],"ability":[17],"to":[18,36,55,74,111,186,207],"this":[20,48,75,138],"has":[22],"become":[23],"easier":[24],"over":[25],"recent":[26],"years":[27],"and":[28,87,106,117,194,218],"the":[29,40,85,101,104,119,134,160,208,215],"rate":[30],"production":[33],"is":[34,53,77,93,115,155],"likely":[35],"increase":[37],"rapidly":[38],"near":[41],"future.":[42],"One":[43],"major":[44],"problem":[45,76,210],"associated":[46],"with":[47,182],"vast":[49],"amount":[50,146],"how":[54,129],"store":[56],"it":[57,62],"a":[59,68,78,81,91,144,152,169,183,203],"way":[60],"that":[61,142,177],"be":[64],"easily":[65],"retrieved":[66],"at":[67,159],"later":[69],"date.":[70],"obvious":[72],"answer":[73],"database.":[79],"However,":[80],"key":[82],"issue":[83],"development":[86],"maintenance":[88],"such":[90],"database":[92,171,185],"its":[94],"sustainability,":[95],"which":[96,173],"turn":[98],"depends":[99],"on":[100,128],"ease":[102],"deposition":[105],"retrieval":[107,220],"process.":[108],"Encouraging":[109],"users":[110],"care":[112],"about":[113],"meta-data":[114],"difficult":[116],"thus":[118],"success":[120],"any":[122],"storage":[123],"system":[124,135,172,191],"will":[125],"ultimately":[126],"depend":[127],"well":[130],"used":[131],"by":[132],"end-users":[133],"is.":[136],"In":[137],"respect":[139],"we":[140,174],"suggest":[141],"even":[143],"minimal":[145],"metadata":[148],"if":[149,157],"stored":[150],"sensible":[153],"fashion":[154],"useful,":[156],"only":[158],"level":[161],"individual":[163],"research":[164],"groups.":[165],"We":[166],"discuss":[167],"here,":[168],"simple":[170,190],"call":[175],"'Bookshelf',":[176],"uses":[178],"python":[179],"conjunction":[181],"mysql":[184],"provide":[187],"an":[188],"extremely":[189],"for":[192],"curating":[193],"keeping":[195],"track":[196],"molecular":[198],"simulation":[199,213],"data.":[200],"It":[201],"provides":[202],"user-friendly,":[204],"scriptable":[205],"solution":[206],"common":[209],"amongst":[211],"biomolecular":[212],"laboratories;":[214],"storage,":[216],"logging":[217],"subsequent":[219],"large":[222],"numbers":[223],"simulations.":[225],"Download":[226],"URL:":[227],"http://sbcb.bioch.ox.ac.uk/bookshelf/":[228]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
