{"id":"https://openalex.org/W2115699469","doi":"https://doi.org/10.1093/database/baq013","title":"The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information","display_name":"The Human Oral Microbiome Database: a web accessible resource for investigating oral microbe taxonomic and genomic information","publication_year":2010,"publication_date":"2010-07-06","ids":{"openalex":"https://openalex.org/W2115699469","doi":"https://doi.org/10.1093/database/baq013","mag":"2115699469","pmid":"https://pubmed.ncbi.nlm.nih.gov/20624719"},"language":"en","primary_location":{"id":"doi:10.1093/database/baq013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq013","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq013/1132285/baq013.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq013/1132285/baq013.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003682361","display_name":"T. Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I2799826445","display_name":"Forsyth County Schools","ror":"https://ror.org/0234w4k48","country_code":"US","type":"education","lineage":["https://openalex.org/I2799826445"]},{"id":"https://openalex.org/I2800451075","display_name":"Forsyth Technical Community College","ror":"https://ror.org/00het1s45","country_code":"US","type":"education","lineage":["https://openalex.org/I2800451075"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"T. Chen","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA. tchen@forsyth.org","The Forsyth Institute, Boston MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA. tchen@forsyth.org","institution_ids":["https://openalex.org/I2800451075","https://openalex.org/I2799826445"]},{"raw_affiliation_string":"The Forsyth Institute, Boston MA 02115, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059088045","display_name":"Wen\u2010Han Yu","orcid":"https://orcid.org/0000-0002-1671-9744"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"W.-H. Yu","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034600868","display_name":"Jacques Izard","orcid":"https://orcid.org/0000-0002-5904-5436"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Izard","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111908433","display_name":"O. V. Baranova","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"O. V. Baranova","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033652786","display_name":"A. Lakshmanan","orcid":"https://orcid.org/0000-0003-2759-2627"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Lakshmanan","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064446453","display_name":"Floyd E. Dewhirst","orcid":"https://orcid.org/0000-0003-4427-7928"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. E. Dewhirst","raw_affiliation_strings":["The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Forsyth Institute, Boston, MA 02115, USA and 2Department of Oral Medicine, Infection and Immunity, Harvard School of Dental Medicine, Boston, MA 02115, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":23.5131,"has_fulltext":true,"cited_by_count":1189,"citation_normalized_percentile":{"value":0.99815281,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"2010","issue":"0","first_page":"baq013","last_page":"baq013"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11452","display_name":"Oral Health Pathology and Treatment","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/human-microbiome-project","display_name":"Human Microbiome Project","score":0.8601038455963135},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.7099035382270813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6649587750434875},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6083666086196899},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.565137505531311},{"id":"https://openalex.org/keywords/oral-microbiome","display_name":"Oral Microbiome","score":0.5438156723976135},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5297922492027283},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5095286965370178},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.5087984204292297},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"Human microbiome","score":0.48592081665992737},{"id":"https://openalex.org/keywords/16s-ribosomal-rna","display_name":"16S ribosomal RNA","score":0.47277167439460754},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3651767373085022},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.35064786672592163},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2996957302093506}],"concepts":[{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.8601038455963135},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.7099035382270813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6649587750434875},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6083666086196899},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.565137505531311},{"id":"https://openalex.org/C2910160754","wikidata":"https://www.wikidata.org/wiki/Q1500347","display_name":"Oral Microbiome","level":3,"score":0.5438156723976135},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5297922492027283},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5095286965370178},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.5087984204292297},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.48592081665992737},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.47277167439460754},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3651767373085022},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.35064786672592163},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2996957302093506}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D009055","descriptor_name":"Mouth","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012329","descriptor_name":"RNA, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/database/baq013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq013","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq013/1132285/baq013.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20624719","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20624719","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:digitalcommons.unl.edu:foodsciefacpub-1339","is_oa":false,"landing_page_url":"https://digitalcommons.unl.edu/foodsciefacpub/338","pdf_url":null,"source":{"id":"https://openalex.org/S4306400577","display_name":"Lincoln (University of Nebraska)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114395901","host_organization_name":"University of Nebraska\u2013Lincoln","host_organization_lineage":["https://openalex.org/I114395901"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Department of Food Science and Technology: Faculty Publications","raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:2911848","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2911848","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/baq013","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/baq013","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/baq013/1132285/baq013.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1229592990","display_name":null,"funder_award_id":"DE017106","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G3232656510","display_name":null,"funder_award_id":"DE016937","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G3789682123","display_name":null,"funder_award_id":"R21 DE017106","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"},{"id":"https://openalex.org/G7039327034","display_name":null,"funder_award_id":"U01 DE016937","funder_id":"https://openalex.org/F4320337365","funder_display_name":"National Institute of Dental and Craniofacial Research"}],"funders":[{"id":"https://openalex.org/F4320337365","display_name":"National Institute of Dental and Craniofacial Research","ror":"https://ror.org/004a2wv92"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2115699469.pdf","grobid_xml":"https://content.openalex.org/works/W2115699469.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W292602008","https://openalex.org/W1513501940","https://openalex.org/W1578104218","https://openalex.org/W1852860123","https://openalex.org/W1868460409","https://openalex.org/W1869416713","https://openalex.org/W1958621998","https://openalex.org/W1964601484","https://openalex.org/W1965118040","https://openalex.org/W1965974354","https://openalex.org/W1988431525","https://openalex.org/W2019094601","https://openalex.org/W2022366078","https://openalex.org/W2027729467","https://openalex.org/W2044251889","https://openalex.org/W2045319488","https://openalex.org/W2046854548","https://openalex.org/W2051385743","https://openalex.org/W2063162077","https://openalex.org/W2079664984","https://openalex.org/W2079899518","https://openalex.org/W2091326515","https://openalex.org/W2095566926","https://openalex.org/W2096946545","https://openalex.org/W2099398646","https://openalex.org/W2101595316","https://openalex.org/W2103017472","https://openalex.org/W2111973517","https://openalex.org/W2113891856","https://openalex.org/W2116554395","https://openalex.org/W2123216911","https://openalex.org/W2126189930","https://openalex.org/W2127415562","https://openalex.org/W2131186249","https://openalex.org/W2135304075","https://openalex.org/W2145336165","https://openalex.org/W2148795079","https://openalex.org/W2148853951","https://openalex.org/W2150227488","https://openalex.org/W2150683262","https://openalex.org/W2157200603","https://openalex.org/W2158327292","https://openalex.org/W2158714788","https://openalex.org/W2160668169","https://openalex.org/W2166043581","https://openalex.org/W2168103533","https://openalex.org/W2169366834","https://openalex.org/W2171571559","https://openalex.org/W2175093233","https://openalex.org/W3165932680","https://openalex.org/W4244818997"],"related_works":["https://openalex.org/W1222064643","https://openalex.org/W2086098522","https://openalex.org/W2967601684","https://openalex.org/W1577826155","https://openalex.org/W4385414771","https://openalex.org/W3149998985","https://openalex.org/W1603910045","https://openalex.org/W3139084279","https://openalex.org/W2148304448","https://openalex.org/W2017030127"],"abstract_inverted_index":{"The":[0,25,63,156],"human":[1,8,59,97,211,259],"oral":[2,60,98,123,135,212],"microbiome":[3,61,255],"is":[4,52,73,173],"the":[5,13,67,76,86,96,210,230,238,252],"most":[6],"studied":[7],"microflora,":[9],"but":[10],"53%":[11],"of":[12,65,114,134,200,229,254],"species":[14,91,124],"have":[15,216],"not":[16],"yet":[17],"been":[18,217],"validly":[19],"named":[20],"and":[21,46,120,125,137,147,163,203,219],"35%":[22],"remain":[23],"uncultivated.":[24],"uncultivated":[26],"taxa":[27,126],"are":[28,93,116,234],"known":[29],"primarily":[30],"from":[31,128],"16S":[32,104,129,144,178,187],"rRNA":[33,105,130,145,179,188],"sequence":[34,132],"information.":[35],"Sequence":[36],"information":[37,115,165],"tied":[38],"solely":[39],"to":[40,56,74,175,182,237],"obscure":[41],"isolate":[42],"or":[43],"clone":[44],"numbers,":[45],"usually":[47],"lacking":[48],"accurate":[49],"phylogenetic":[50],"placement,":[51],"a":[53,80,102,183,248],"major":[54],"impediment":[55],"working":[57],"with":[58,79],"data.":[62],"goal":[64],"creating":[66],"Human":[68,151,231],"Oral":[69,152,222],"Microbiome":[70,232],"Database":[71,262],"(HOMD)":[72],"provide":[75,245],"scientific":[77],"community":[78],"body":[81,260],"site-specific":[82],"comprehensive":[83,198],"database":[84],"for":[85,166,208,251,257],"more":[87],"than":[88],"600":[89],"prokaryote":[90],"that":[92,215],"present":[94],"in":[95,118],"cavity":[99],"based":[100],"on":[101],"curated":[103],"gene-based":[106],"provisional":[107],"naming":[108],"scheme.":[109],"Currently,":[110],"two":[111],"primary":[112],"types":[113],"provided":[117,174],"HOMD--taxonomic":[119],"genomic.":[121],"Named":[122],"identified":[127],"gene":[131,180,189],"analysis":[133,201],"isolates":[136],"cloning":[138],"studies":[139],"were":[140],"placed":[141],"into":[142],"defined":[143],"phylotypes":[146],"each":[148,167],"given":[149],"unique":[150],"Taxon":[153],"(HOT)":[154],"number.":[155],"HOT":[157],"interlinks":[158],"phenotypic,":[159],"phylogenetic,":[160],"genomic,":[161],"clinical":[162],"bibliographic":[164],"taxon.":[168],"A":[169],"BLAST":[170],"search":[171],"tool":[172],"match":[176],"user":[177],"sequences":[181],"curated,":[184],"full":[185],"length,":[186],"reference":[190],"data":[191,256],"set.":[192],"For":[193],"genomic":[194],"analysis,":[195],"HOMD":[196,239,246],"provides":[197],"set":[199],"tools":[202],"maintains":[204],"frequently":[205],"updated":[206],"annotations":[207],"all":[209],"microbial":[213],"genomes":[214],"sequenced":[218],"publicly":[220],"released.":[221],"bacterial":[223],"genome":[224],"sequences,":[225],"determined":[226],"as":[227,240,247],"part":[228],"Project,":[233],"being":[235],"added":[236],"they":[241],"become":[242],"available.":[243],"We":[244],"conceptual":[249],"model":[250],"presentation":[253],"other":[258],"sites.":[261],"URL:":[263],"http://www.homd.org.":[264]},"counts_by_year":[{"year":2026,"cited_by_count":43},{"year":2025,"cited_by_count":80},{"year":2024,"cited_by_count":83},{"year":2023,"cited_by_count":100},{"year":2022,"cited_by_count":85},{"year":2021,"cited_by_count":122},{"year":2020,"cited_by_count":114},{"year":2019,"cited_by_count":109},{"year":2018,"cited_by_count":100},{"year":2017,"cited_by_count":76},{"year":2016,"cited_by_count":71},{"year":2015,"cited_by_count":58},{"year":2014,"cited_by_count":53},{"year":2013,"cited_by_count":28},{"year":2012,"cited_by_count":36}],"updated_date":"2026-07-01T08:55:40.977307","created_date":"2025-10-10T00:00:00"}
