{"id":"https://openalex.org/W2103308144","doi":"https://doi.org/10.1093/database/bap019","title":"Integrating text mining into the MGI biocuration workflow","display_name":"Integrating text mining into the MGI biocuration workflow","publication_year":2009,"publication_date":"2009-11-20","ids":{"openalex":"https://openalex.org/W2103308144","doi":"https://doi.org/10.1093/database/bap019","mag":"2103308144","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157492"},"language":"en","primary_location":{"id":"doi:10.1093/database/bap019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap019/1024360/bap019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap019/1024360/bap019.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073482225","display_name":"Karen Dowell","orcid":"https://orcid.org/0000-0002-7211-0140"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"K.G. Dowell","raw_affiliation_strings":["The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038094151","display_name":"Monica McAndrews-Hill","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]},{"id":"https://openalex.org/I7947594","display_name":"University of Maine","ror":"https://ror.org/01adr0w49","country_code":"US","type":"education","lineage":["https://openalex.org/I2802397601","https://openalex.org/I7947594"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.S. McAndrews-Hill","raw_affiliation_strings":["The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA","institution_ids":["https://openalex.org/I7947594","https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029292423","display_name":"David P. Hill","orcid":"https://orcid.org/0000-0001-7476-6306"},"institutions":[{"id":"https://openalex.org/I7947594","display_name":"University of Maine","ror":"https://ror.org/01adr0w49","country_code":"US","type":"education","lineage":["https://openalex.org/I2802397601","https://openalex.org/I7947594"]},{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D.P. Hill","raw_affiliation_strings":["The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA","institution_ids":["https://openalex.org/I7947594","https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006288716","display_name":"Harold Drabkin","orcid":"https://orcid.org/0000-0003-2689-5511"},"institutions":[{"id":"https://openalex.org/I7947594","display_name":"University of Maine","ror":"https://ror.org/01adr0w49","country_code":"US","type":"education","lineage":["https://openalex.org/I2802397601","https://openalex.org/I7947594"]},{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H.J. Drabkin","raw_affiliation_strings":["The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA","institution_ids":["https://openalex.org/I7947594","https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016349593","display_name":"Judith A. Blake","orcid":"https://orcid.org/0000-0001-8522-334X"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]},{"id":"https://openalex.org/I7947594","display_name":"University of Maine","ror":"https://ror.org/01adr0w49","country_code":"US","type":"education","lineage":["https://openalex.org/I2802397601","https://openalex.org/I7947594"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J.A. Blake","raw_affiliation_strings":["The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA"],"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Mouse Genome Informatics, 600 Main Street, Bar Harbor, ME 04609-1500, USA and 2University of Maine, Graduate School of Biomedical Sciences, Barrows Hall, Orono, ME 04469, USA","institution_ids":["https://openalex.org/I7947594","https://openalex.org/I4210115256"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5073482225"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":3.3596,"has_fulltext":true,"cited_by_count":75,"citation_normalized_percentile":{"value":0.92871825,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"2009","issue":"0","first_page":"bap019","last_page":"bap019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9513000249862671,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9509000182151794,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8030905723571777},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.758700430393219},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.5688518285751343},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.5626907348632812},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5377201437950134},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5122246146202087},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.505690336227417},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.49190807342529297},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4906531870365143},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4791364371776581},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4551941156387329},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.4332963824272156},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.42989233136177063},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3711569011211395},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.2711680233478546},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2138199508190155},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19518011808395386},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18435260653495789},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.18399450182914734},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09286049008369446}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8030905723571777},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.758700430393219},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.5688518285751343},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.5626907348632812},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5377201437950134},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5122246146202087},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.505690336227417},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.49190807342529297},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4906531870365143},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4791364371776581},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4551941156387329},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.4332963824272156},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.42989233136177063},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3711569011211395},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.2711680233478546},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2138199508190155},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19518011808395386},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18435260653495789},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.18399450182914734},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09286049008369446},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bap019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap019/1024360/bap019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20157492","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157492","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2797454","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2797454","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bap019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap019","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap019/1024360/bap019.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G1627472408","display_name":null,"funder_award_id":"HG000330","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6044225711","display_name":null,"funder_award_id":"CA089713","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6414905909","display_name":null,"funder_award_id":"HG0022","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7563431915","display_name":null,"funder_award_id":"CA089713","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8164471825","display_name":null,"funder_award_id":"IGERT","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G839285823","display_name":null,"funder_award_id":"HG002273","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8601192671","display_name":"IGERT:  Predoctoral Training in Functional Genomics of Model Organisms","funder_award_id":"0221625","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320307136","display_name":"American Association of Immunologists","ror":"https://ror.org/04q9fhm49"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337368","display_name":"Division of Graduate Education","ror":"https://ror.org/00whkrf32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103308144.pdf","grobid_xml":"https://content.openalex.org/works/W2103308144.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W18286363","https://openalex.org/W140600869","https://openalex.org/W1603229901","https://openalex.org/W1825157170","https://openalex.org/W1987522618","https://openalex.org/W1991983805","https://openalex.org/W2018874418","https://openalex.org/W2026656222","https://openalex.org/W2044514479","https://openalex.org/W2061166439","https://openalex.org/W2071221957","https://openalex.org/W2079691202","https://openalex.org/W2108108770","https://openalex.org/W2124617249","https://openalex.org/W2126276057","https://openalex.org/W2129113459","https://openalex.org/W2132180308","https://openalex.org/W2141869602","https://openalex.org/W2146486983","https://openalex.org/W2170981556"],"related_works":["https://openalex.org/W2407615899","https://openalex.org/W2189020697","https://openalex.org/W2071108800","https://openalex.org/W2566288590","https://openalex.org/W4308590518","https://openalex.org/W3136603362","https://openalex.org/W2138000716","https://openalex.org/W2509752429","https://openalex.org/W1926995174","https://openalex.org/W3133830741"],"abstract_inverted_index":{"A":[0],"major":[1],"challenge":[2],"for":[3,22,106,147,185,260,287],"functional":[4],"and":[5,58,61,124,135,157,195,245,248,276],"comparative":[6],"genomics":[7],"resource":[8],"development":[9],"is":[10,25,206],"the":[11,16,44,201,225,230,235,285,288,295,298],"extraction":[12,62],"of":[13,43,255,267,291,297],"data":[14,24,156],"from":[15],"biomedical":[17,299],"literature.":[18,300],"Although":[19,162],"text":[20,108,257],"mining":[21,109,258],"biological":[23,54,160],"an":[26,207,221,265],"active":[27],"research":[28],"field,":[29],"few":[30],"applications":[31],"have":[32,75],"been":[33],"integrated":[34],"into":[35,115,294],"production":[36],"literature":[37],"curation":[38,70,168,193,209,296],"systems":[39],"such":[40],"as":[41],"those":[42,87],"model":[45],"organism":[46],"databases":[47],"(MODs).":[48],"Not":[49],"only":[50],"are":[51,80,176,217],"most":[52],"available":[53,85],"natural":[55],"language":[56],"(bioNLP)":[57],"information":[59],"retrieval":[60],"solutions":[63],"difficult":[64],"to":[65,67,82,128,178],"adapt":[66],"existing":[68],"MOD":[69],"workflows,":[71],"but":[72],"many":[73],"also":[74],"high":[76],"error":[77],"rates":[78],"or":[79],"unable":[81],"process":[83],"documents":[84],"in":[86,220,234],"formats":[88],"preferred":[89],"by":[90],"scientific":[91],"journals.In":[92],"September":[93],"2008,":[94],"Mouse":[95],"Genome":[96],"Informatics":[97],"(MGI)":[98],"at":[99],"The":[100],"Jackson":[101],"Laboratory":[102],"initiated":[103],"a":[104,145,252],"search":[105,241],"dictionary-based":[107],"tools":[110,184,259],"that":[111,167,188,211],"we":[112,163,175,238,250,283],"could":[113],"integrate":[114],"our":[116,192,240,268],"biocuration":[117],"workflow.":[118],"MGI":[119,202,236],"has":[120],"rigorous":[121],"document":[122],"triage":[123],"annotation":[125],"procedures":[126],"designed":[127],"identify":[129],"appropriate":[130,226],"articles":[131,144],"about":[132],"mouse":[133,215],"genetics":[134],"genome":[136],"biology.":[137],"We":[138,263],"currently":[139],"screen":[140],"approximately":[141],"1000":[142],"journal":[143],"month":[146],"Gene":[148,204],"Ontology":[149],"terms,":[150],"gene":[151,153,186,197,227],"mapping,":[152],"expression,":[154],"phenotype":[155],"other":[158],"key":[159],"information.":[161],"do":[164],"not":[165],"foresee":[166],"tasks":[169,199],"will":[170],"ever":[171],"be":[172],"fully":[173],"automated,":[174],"eager":[177],"implement":[179],"named":[180],"entity":[181],"recognition":[182],"(NER)":[183],"tagging":[187],"can":[189],"help":[190],"streamline":[191],"workflow":[194],"simplify":[196],"indexing":[198,205],"within":[200],"system.":[203],"MGI-specific":[208],"function":[210],"involves":[212],"identifying":[213],"which":[214],"genes":[216],"being":[218],"studied":[219],"article,":[222],"then":[223],"associating":[224],"symbols":[228],"with":[229,271],"article":[231],"reference":[232],"number":[233],"database.Here,":[237],"discuss":[239],"process,":[242],"performance":[243],"metrics":[244],"success":[246],"criteria,":[247],"how":[249],"identified":[251],"short":[253],"list":[254],"potential":[256,286],"further":[261,289],"evaluation.":[262],"provide":[264],"overview":[266],"pilot":[269],"projects":[270],"NCBO's":[272],"Open":[273],"Biomedical":[274],"Annotator":[275],"Fraunhofer":[277],"SCAI's":[278],"ProMiner.":[279],"In":[280],"doing":[281],"so,":[282],"prove":[284],"incorporation":[290],"semi-automated":[292],"processes":[293]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":22},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":17}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
