{"id":"https://openalex.org/W2138565208","doi":"https://doi.org/10.1093/database/bap015","title":"A large and accurate collection of peptidase cleavages in the MEROPS database","display_name":"A large and accurate collection of peptidase cleavages in the MEROPS database","publication_year":2009,"publication_date":"2009-11-02","ids":{"openalex":"https://openalex.org/W2138565208","doi":"https://doi.org/10.1093/database/bap015","mag":"2138565208","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157488"},"language":"en","primary_location":{"id":"doi:10.1093/database/bap015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap015/1021879/bap015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap015/1021879/bap015.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051168121","display_name":"Neil D. Rawlings","orcid":"https://orcid.org/0000-0001-5557-7665"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"N. D. Rawlings","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK","Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire. CB10 1SA. UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire. CB10 1SA. UK","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5051168121"],"corresponding_institution_ids":["https://openalex.org/I2802476451"],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":1.918,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.86480297,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2009","issue":"0","first_page":"bap015","last_page":"bap015"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11561","display_name":"Protein Hydrolysis and Bioactive Peptides","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cleavage","display_name":"Cleavage (geology)","score":0.7695441246032715},{"id":"https://openalex.org/keywords/polyproteins","display_name":"Polyproteins","score":0.760260283946991},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.559760570526123},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4794574975967407},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.46542972326278687},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.46072816848754883},{"id":"https://openalex.org/keywords/conserved-sequence","display_name":"Conserved sequence","score":0.43513745069503784},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3572639524936676},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.28326183557510376},{"id":"https://openalex.org/keywords/protease","display_name":"Protease","score":0.22011646628379822},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14534050226211548},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.07004967331886292}],"concepts":[{"id":"https://openalex.org/C175156509","wikidata":"https://www.wikidata.org/wiki/Q1990218","display_name":"Cleavage (geology)","level":3,"score":0.7695441246032715},{"id":"https://openalex.org/C2910895815","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Polyproteins","level":4,"score":0.760260283946991},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.559760570526123},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4794574975967407},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.46542972326278687},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.46072816848754883},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.43513745069503784},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3572639524936676},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.28326183557510376},{"id":"https://openalex.org/C2776714187","wikidata":"https://www.wikidata.org/wiki/Q212410","display_name":"Protease","level":3,"score":0.22011646628379822},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14534050226211548},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.07004967331886292},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C43369102","wikidata":"https://www.wikidata.org/wiki/Q2307625","display_name":"Fracture (geology)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bap015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap015/1021879/bap015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20157488","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157488","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2790309","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2790309","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bap015","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap015","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap015/1021879/bap015.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5400000214576721,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138565208.pdf","grobid_xml":"https://content.openalex.org/works/W2138565208.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W153825513","https://openalex.org/W1134872797","https://openalex.org/W1519266993","https://openalex.org/W1540277295","https://openalex.org/W1567730256","https://openalex.org/W1569826234","https://openalex.org/W1590614500","https://openalex.org/W1593295279","https://openalex.org/W1895363435","https://openalex.org/W1952065778","https://openalex.org/W1965899719","https://openalex.org/W1967369227","https://openalex.org/W1972875046","https://openalex.org/W1974885063","https://openalex.org/W1976086374","https://openalex.org/W1985917720","https://openalex.org/W1988002961","https://openalex.org/W1989068557","https://openalex.org/W1998340198","https://openalex.org/W2001978244","https://openalex.org/W2005832407","https://openalex.org/W2010730959","https://openalex.org/W2011531910","https://openalex.org/W2013270869","https://openalex.org/W2018692481","https://openalex.org/W2028068087","https://openalex.org/W2033159656","https://openalex.org/W2035050000","https://openalex.org/W2043972629","https://openalex.org/W2046347466","https://openalex.org/W2048255626","https://openalex.org/W2052788415","https://openalex.org/W2054809740","https://openalex.org/W2056461294","https://openalex.org/W2061278857","https://openalex.org/W2074912245","https://openalex.org/W2076048958","https://openalex.org/W2086554981","https://openalex.org/W2089047063","https://openalex.org/W2095011910","https://openalex.org/W2096525273","https://openalex.org/W2099836083","https://openalex.org/W2107159689","https://openalex.org/W2110165129","https://openalex.org/W2122460814","https://openalex.org/W2125074509","https://openalex.org/W2125932935","https://openalex.org/W2128991206","https://openalex.org/W2132109794","https://openalex.org/W2145195328","https://openalex.org/W2150897271","https://openalex.org/W2153604743","https://openalex.org/W2154139219","https://openalex.org/W2158266834","https://openalex.org/W2168479457","https://openalex.org/W2189116767","https://openalex.org/W2469296938","https://openalex.org/W4239678514","https://openalex.org/W4246995357","https://openalex.org/W4251174927","https://openalex.org/W4256647041"],"related_works":["https://openalex.org/W2050498291","https://openalex.org/W2054728806","https://openalex.org/W2080576612","https://openalex.org/W2170215368","https://openalex.org/W2078906786","https://openalex.org/W1579199588","https://openalex.org/W1969124626","https://openalex.org/W2057529276","https://openalex.org/W2041497601","https://openalex.org/W2138565208"],"abstract_inverted_index":{"Peptidases":[0,11],"are":[1,12,63,99,209,213,239,242],"enzymes":[2],"that":[3,178,208,241],"hydrolyse":[4],"peptide":[5],"bonds":[6],"in":[7,14,53,67,84,119,163,173,194],"proteins":[8,80,161],"and":[9,22,25,43,57,60,81,137,152,202,233,266,279,296],"peptides.":[10],"important":[13],"pathological":[15],"conditions":[16],"such":[17],"as":[18,92,134,166],"Alzheimer's":[19],"disease,":[20],"tumour":[21],"parasite":[23],"invasion,":[24],"for":[26,111,272,277,291,297],"processing":[27],"viral":[28],"polyproteins.":[29],"The":[30,45,87,97,123,285],"MEROPS":[31,121],"database":[32,46],"is":[33,94,109,248,260,267],"an":[34],"Internet":[35,265],"resource":[36],"containing":[37],"information":[38],"on":[39],"peptidases,":[40],"their":[41],"substrates":[42,168,276],"inhibitors.":[44],"now":[47,125],"includes":[48],"details":[49],"of":[50,76,89,113,159,191,196,216,255,294],"cleavage":[51,108,182,247,280],"positions":[52,281],"substrates,":[54],"both":[55],"physiological":[56,256],"non-physiological,":[58],"natural":[59],"synthetic.":[61],"There":[62,212],"39":[64],"118":[65],"cleavages":[66,83,90],"the":[68,114,120,141,160,164,176,189,264,292],"collection;":[69],"including":[70],"34":[71],"606":[72],"from":[73,101],"a":[74,135,138,144,179,203,214,220,234,268],"total":[75],"10":[77],"513":[78],"different":[79,116],"2677":[82],"synthetic":[85],"substrates.":[86,284],"number":[88,204,215],"designated":[91],"'physiological'":[93],"13":[95],"307.":[96],"data":[98,286],"derived":[100],"6095":[102],"publications.":[103],"At":[104],"least":[105],"one":[106],"substrate":[107,151],"known":[110],"45%":[112],"2415":[115],"peptidases":[117,278],"recognized":[118],"database.":[122],"website":[124],"has":[126,199,230],"three":[127],"new":[128],"displays:":[129],"two":[130],"showing":[131,143],"peptidase":[132,167,197],"specificity":[133],"logo":[136],"frequency":[139],"matrix,":[140],"third":[142],"dynamically":[145],"generated":[146],"alignment":[147],"between":[148,187],"each":[149],"protein":[150],"its":[153],"most":[154],"closely":[155],"related":[156],"homologues.":[157],"Many":[158],"described":[162],"literature":[165],"have":[169,205],"been":[170,200,206,231],"studied":[171],"only":[172],"vitro.":[174],"On":[175],"assumption":[177],"physiologically":[180],"relevant":[181],"site":[183,193,221,229],"would":[184],"be":[185,224,252,289],"conserved":[186,228,245],"species,":[188],"conservation":[190],"every":[192],"terms":[195],"preference":[198],"examined":[201,232],"identified":[207,240],"not":[210,223],"conserved.":[211,225],"cogent":[217],"reasons":[218],"why":[219],"might":[222],"Each":[226],"poorly":[227,244],"reason":[235],"postulated.":[236],"Some":[237],"sites":[238],"very":[243],"where":[246],"more":[249],"likely":[250],"to":[251,274],"fortuitous":[253],"than":[254],"relevance.":[257],"This":[258],"data-set":[259],"freely":[261],"available":[262],"via":[263],"useful":[269,290],"training":[270],"set":[271],"algorithms":[273],"predict":[275],"within":[282],"those":[283],"may":[287],"also":[288],"design":[293],"inhibitors":[295],"engineering":[298],"novel":[299],"specificities":[300],"into":[301],"peptidases.Database":[302],"URL:http://merops.sanger.ac.uk.":[303]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":3}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
