{"id":"https://openalex.org/W2110335307","doi":"https://doi.org/10.1093/database/bap014","title":"ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies","display_name":"ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies","publication_year":2009,"publication_date":"2009-10-12","ids":{"openalex":"https://openalex.org/W2110335307","doi":"https://doi.org/10.1093/database/bap014","mag":"2110335307","pmid":"https://pubmed.ncbi.nlm.nih.gov/20157487"},"language":"en","primary_location":{"id":"doi:10.1093/database/bap014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap014","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap014/1021387/bap014.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap014/1021387/bap014.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047468690","display_name":"W. Valdivia-Granda","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"W. Valdivia-Granda","raw_affiliation_strings":["Orion Integrated Biosciences Inc., New Rochelle, NY, 10805, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Orion Integrated Biosciences Inc., New Rochelle, NY, 10805, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090897071","display_name":"Francis Larson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"F. Larson","raw_affiliation_strings":["Orion Integrated Biosciences Inc., New Rochelle, NY, 10805, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Orion Integrated Biosciences Inc., New Rochelle, NY, 10805, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5047468690"],"corresponding_institution_ids":[],"apc_list":{"value":1415,"currency":"GBP","value_usd":1735},"apc_paid":{"value":1415,"currency":"GBP","value_usd":1735},"fwci":0.2951,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.65745247,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2009","issue":"0","first_page":"bap014","last_page":"bap014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.5261012315750122},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.485518217086792},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4753172993659973},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4581029415130615},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.4388171434402466},{"id":"https://openalex.org/keywords/virus-classification","display_name":"Virus classification","score":0.43252187967300415},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.41060858964920044},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.26846468448638916},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15667524933815002},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15375065803527832}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.5261012315750122},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.485518217086792},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4753172993659973},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4581029415130615},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.4388171434402466},{"id":"https://openalex.org/C20850961","wikidata":"https://www.wikidata.org/wiki/Q478216","display_name":"Virus classification","level":4,"score":0.43252187967300415},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.41060858964920044},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.26846468448638916},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15667524933815002},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15375065803527832}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/database/bap014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap014","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap014/1021387/bap014.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},{"id":"pmid:20157487","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20157487","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database : the journal of biological databases and curation","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2790308","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2790308","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Database (Oxford)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/database/bap014","is_oa":true,"landing_page_url":"https://doi.org/10.1093/database/bap014","pdf_url":"https://academic.oup.com/database/article-pdf/doi/10.1093/database/bap014/1021387/bap014.pdf","source":{"id":"https://openalex.org/S4210201630","display_name":"Database","issn_l":"1758-0463","issn":["1758-0463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Database","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332186","display_name":"Defense Threat Reduction Agency","ror":"https://ror.org/04tz64554"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2110335307.pdf","grobid_xml":"https://content.openalex.org/works/W2110335307.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W110615423","https://openalex.org/W1568374084","https://openalex.org/W1975987810","https://openalex.org/W1987965864","https://openalex.org/W1996615242","https://openalex.org/W1999200033","https://openalex.org/W2004122592","https://openalex.org/W2004836290","https://openalex.org/W2023778702","https://openalex.org/W2025476381","https://openalex.org/W2048053704","https://openalex.org/W2052097062","https://openalex.org/W2053931156","https://openalex.org/W2058210165","https://openalex.org/W2064361857","https://openalex.org/W2074534580","https://openalex.org/W2096525273","https://openalex.org/W2099510258","https://openalex.org/W2104580775","https://openalex.org/W2106197985","https://openalex.org/W2114938008","https://openalex.org/W2124165983","https://openalex.org/W2126162505","https://openalex.org/W2133883537","https://openalex.org/W2141531337","https://openalex.org/W2142385013","https://openalex.org/W2142734829","https://openalex.org/W2145678900","https://openalex.org/W2153461135","https://openalex.org/W2157531847","https://openalex.org/W2158700061","https://openalex.org/W2160469031","https://openalex.org/W2163782220","https://openalex.org/W2402499644","https://openalex.org/W4235333019","https://openalex.org/W4239678514"],"related_works":["https://openalex.org/W24553703","https://openalex.org/W4211000692","https://openalex.org/W4212920271","https://openalex.org/W2612240612","https://openalex.org/W4324018414","https://openalex.org/W4211208250","https://openalex.org/W4211054902","https://openalex.org/W2472351724","https://openalex.org/W3145366215","https://openalex.org/W4311414634"],"abstract_inverted_index":{"Viruses,":[0],"viroids":[1],"and":[2,25,85,109,133,139,151,164,173,185,193,198,231,239],"prions":[3],"are":[4,126],"the":[5,36,40,52,81,92,107,162,171,204,207,211,222,228,244,248,249],"smallest":[6],"infectious":[7],"biological":[8],"entities":[9],"that":[10,106,217,232],"depend":[11],"on":[12,39],"their":[13,26],"host":[14],"for":[15,55,79,161],"replication.":[16],"The":[17,175],"number":[18],"of":[19,42,111,166,179,210],"pathogenic":[20],"viruses":[21],"is":[22,32,96,104,148,181],"considerably":[23],"large":[24,70],"impact":[27],"in":[28,183,243],"human":[29],"global":[30],"health":[31],"well":[33],"documented.":[34],"Currently,":[35],"International":[37],"Committee":[38],"Taxonomy":[41],"Viruses":[43],"(ICTV)":[44],"has":[45,63,187],"classified":[46],"approximately":[47],"4379":[48],"virus":[49,89],"species":[50,114,241],"while":[51],"National":[53],"Center":[54],"Biotechnology":[56],"Information":[57],"Viral":[58],"Genomes":[59],"Resource":[60],"(NCBI-VGR)":[61],"database":[62,154],"mapped":[64,197,226],"617":[65,200],"705":[66,201],"proteins":[67],"to":[68,91,100,130,156,190,206,227,257],"eight":[69],"taxonomic":[71,145],"groups.":[72],"Despite":[73],"these":[74],"efforts,":[75],"an":[76],"automated":[77],"approach":[78],"mapping":[80,261],"ICTV":[82,172,229,245],"master":[83],"list":[84],"its":[86],"officially":[87],"accepted":[88],"naming":[90,110,209],"NCBI-VGR's":[93],"taxonomical":[94,167],"classification":[95,230,251],"not":[97,127],"available.":[98],"Due":[99],"metagenomic":[101],"sequencing,":[102],"it":[103,186],"likely":[105],"discovery":[108],"new":[112],"viral":[113,124,208],"will":[115],"increase":[116],"by":[117,170],"at":[118],"least":[119],"ten":[120],"fold.":[121],"Unfortunately,":[122],"existing":[123],"databases":[125],"adequately":[128],"prepared":[129],"scale,":[131],"maintain":[132],"annotate":[134],"automatically":[135,196],"ultra-high":[136],"throughput":[137],"sequences":[138],"place":[140],"this":[141],"information":[142],"into":[143],"specific":[144],"categories.":[146],"ORION-VIRCAT":[147,180,195],"a":[149,159],"scalable":[150],"interoperable":[152],"object-relational":[153],"designed":[155],"serve":[157],"as":[158],"resource":[160],"integration":[163],"verification":[165],"classifications":[168],"generated":[169],"NCBI-VGR.":[174],"current":[176],"release":[177],"(v1.0)":[178],"implemented":[182],"PostgreSQL":[184],"been":[188],"extended":[189],"ORACLE,":[191],"MySQL":[192],"SyBase.":[194],"joined":[199],"entries":[202,220],"from":[203,221],"NCBI-VGR":[205,223,250],"ICTV.":[212],"This":[213],"detailed":[214],"analysis":[215],"revealed":[216],"399":[218],"095":[219],"can":[224],"be":[225],"one":[233],"Order,":[234],"10":[235],"families,":[236],"35":[237],"genera":[238],"503":[240],"listed":[242],"disagree":[246],"with":[247],"schema.":[252],"Nevertheless,":[253],"we":[254],"were":[255],"eable":[256],"correct":[258],"several":[259],"discrepancies":[260],"234":[262],"000":[263],"additional":[264],"entries.Database":[265],"URL:http://www.orionbiosciences.com/research/orion-vircat.html.":[266]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
